ZNF550 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000000044 T089168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF550
M07772_2.00 		Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping 		0.816 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000000079 C2H2 ZF 161 183
ENSCJAP00000000079 C2H2 ZF 189 211
ENSCJAP00000000079 C2H2 ZF 217 239
ENSCJAP00000000079 C2H2 ZF 245 267
ENSCJAP00000000079 C2H2 ZF 273 295
ENSCJAP00000000079 C2H2 ZF 301 323
ENSCJAP00000000079 C2H2 ZF 329 351
ENSCJAP00000000079 C2H2 ZF 357 379

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTSYG00000004591 Tarsius syrichta ENSTSYG00000004591 I 0.821
ENSAMEG00000004910 Ailuropoda melanoleuca ENSAMEG00000004910 I 0.819
ZNF550 Canis familiaris ENSCAFG00000002421 I 0.819
ENSCSAG00000001629 Chlorocebus sabaeus ENSCSAG00000001629 I 0.816
ZNF550 Homo sapiens ENSG00000251369 D 0.816
ZNF550 Gorilla gorilla ENSGGOG00000014068 I 0.816
ZNF550 Macaca mulatta ENSMMUG00000006122 I 0.816
ENSNLEG00000010977 Nomascus leucogenys ENSNLEG00000010977 I 0.816
ZNF550 Pan troglodytes ENSPTRG00000011560 I 0.816
ENSMMUP00000031401 Macaca fascicularis ENSMMUP00000031401 I 0.816
ENSMPUG00000006298 Mustela putorius furo ENSMPUG00000006298 I 0.810
ZNF550 Tursiops truncatus ENSTTRG00000000293 I 0.797
ENSOARG00000003673 Ovis aries ENSOARG00000003673 I 0.789