CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF550
(
Pan troglodytes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPTRG00000011560
T108043_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000009623
C2H2 ZF
203
225
YKCKQCGKGFNRKWYLVRHQRVH
ENSPTRP00000009623
C2H2 ZF
231
253
YECNACGKAFSQSSTLIRHYLIH
ENSPTRP00000009623
C2H2 ZF
259
281
YKCLECGKAFKRRSYLMQHHPIH
ENSPTRP00000009623
C2H2 ZF
287
309
YECSQCRKAFTHRSTFIRHNRTH
ENSPTRP00000009623
C2H2 ZF
315
337
FECKECEKAFSNRAHLIQHYIIH
ENSPTRP00000009623
C2H2 ZF
343
365
YDCMACGKAFRCSSELIQHQRIH
ENSPTRP00000009623
C2H2 ZF
371
393
YECTQCGKAFHRSTYLIQHSVIH
ENSPTRP00000009623
C2H2 ZF
399
421
YKCIECGKAFKRRSHLLQHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Pan troglodytes
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZNF550
Gorilla gorilla
ENSGGOG00000014068
I
0.827
ENSNLEG00000010977
Nomascus leucogenys
ENSNLEG00000010977
I
0.827
ENSMMUP00000031401
Macaca fascicularis
ENSMMUP00000031401
I
0.827
ZNF550
Homo sapiens
ENSG00000251369
D
0.827
ZNF550
Macaca mulatta
ENSMMUG00000006122
I
0.827
ENSCSAG00000001629
Chlorocebus sabaeus
ENSCSAG00000001629
I
0.827
ENSTSYG00000004591
Tarsius syrichta
ENSTSYG00000004591
I
0.819
ENSAMEG00000004910
Ailuropoda melanoleuca
ENSAMEG00000004910
I
0.817
ZNF550
Canis familiaris
ENSCAFG00000002421
I
0.817
ZNF550
Callithrix jacchus
ENSCJAG00000000044
I
0.816
ENSMPUG00000006298
Mustela putorius furo
ENSMPUG00000006298
I
0.812
ZNF550
Tursiops truncatus
ENSTTRG00000000293
I
0.800
ENSOARG00000003673
Ovis aries
ENSOARG00000003673
I
0.784