Pavir.J05247 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J05247 T143406_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05247.1.p C2H2 ZF 1001 1024
Pavir.J05247.1.p C2H2 ZF 1054 1078
Pavir.J05247.1.p C2H2 ZF 1084 1110

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Cb01041 Panicum virgatum Pavir.Cb01041 N 0.811
BRADI4G39130 Brachypodium distachyon BRADI4G39130 N 0.771
BGIOSGA036374 Oryza indica BGIOSGA036374 N 0.759
LPERR12G07400 Leersia perrieri LPERR12G07400 N 0.759
OB12G17360 Oryza brachyantha OB12G17360 N 0.759
OBART12G08590 Oryza barthii OBART12G08590 N 0.759
OGLUM12G09840 Oryza glumaepatula OGLUM12G09840 N 0.759
OLONG_018459 Oryza longistaminata OLONG_018459 N 0.759
OMERI12G06120 Oryza meridionalis OMERI12G06120 N 0.759
ONIVA12G08260 Oryza nivara ONIVA12G08260 N 0.759
OPUNC12G07790 Oryza punctata OPUNC12G07790 N 0.759
ORGLA12G0080500 Oryza glaberrima ORGLA12G0080500 N 0.759
ORUFI12G09490 Oryza rufipogon ORUFI12G09490 N 0.759
OS12G0279100 Oryza sativa OS12G0279100 N 0.759
F775_01850 Aegilops tauschii F775_01850 N 0.758
MLOC_55909 Hordeum vulgare MLOC_55909 N 0.758
Traes_5AS_7E3208FD4 Triticum aestivum Traes_5AS_7E3208FD4 N 0.758
Traes_5BS_23717182B Triticum aestivum Traes_5BS_23717182B N 0.758
Traes_5DS_976CBF9EB Triticum aestivum Traes_5DS_976CBF9EB N 0.758
TRIUR3_21570 Triticum urartu TRIUR3_21570 N 0.758