CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SROB_0001653601
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001653601
T156961_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001653601-mRNA-1
C2H2 ZF
145
169
FKCPVVNCEMSFYSRFNQMEHIRTH
SROB_0001653601-mRNA-1
C2H2 ZF
175
199
FTCPEPHCNATFKRRRDLRDHWSMH
SROB_0001653601-mRNA-1
C2H2 ZF
291
315
YHCTYPGCDKSYARRHRLNQHISTH
SROB_0001653601-mRNA-1
C2H2 ZF
321
345
IPCDAPNCNVRYFSEEDLKRHKLSH
SROB_0001653601-mRNA-1
C2H2 ZF
357
381
HACTYAGCGKAYSKLNKLKEHLRSH
SROB_0001653601-mRNA-1
C2H2 ZF
387
411
YVCREPGCGAAFIRLYGVKRHELTH
SROB_0001653601-mRNA-1
C2H2 ZF
458
482
HICPFKECGKAFPKLNKLREHICRH
SROB_0001653601-mRNA-1
C2H2 ZF
488
509
FVCDKCKASFVRMYDLRRHSNI
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A_02028
Schistosoma haematobium
A_02028
N
0.825
SCUD_0002066701
Schistosoma curassoni
SCUD_0002066701
N
0.825
SMRZ_0001314001
Schistosoma margrebowiei
SMRZ_0001314001
N
0.825
SMTD_0002129401
Schistosoma mattheei
SMTD_0002129401
N
0.825
Sjc_0072490
Schistosoma japonicum
Sjc_0072490
N
0.792