CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s05340
(
Populus trichocarpa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
POPTR_0012s05340
T245892_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s05340.1
LOB
46
149
SCNGCRILRKGCGDNCSIKPCLQWIETPDSQSNATLFLAKFYGRAGLMNLINACPQHLRPDTFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVEAVLKGE
Links
Other
LOB
family TFs
Other
Populus trichocarpa
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0851s0010
Salix purpurea
SapurV1A.0851s0010
N
0.909
PRUPE_ppa009213mg
Prunus persica
PRUPE_ppa009213mg
N
0.828
28207.m000107
Ricinus communis
28207.m000107
N
0.828
evm.TU.supercontig_282.15
Carica papaya
evm.TU.supercontig_282.15
N
0.828
Gorai.008G056000
Gossypium raimondii
Gorai.008G056000
N
0.828
AMTR_s00079p00088960
Amborella trichopoda
AMTR_s00079p00088960
N
0.827
GSMUA_Achr4G13790_001
Musa acuminata
GSMUA_Achr4G13790_001
N
0.827
Cla007208
Citrullus lanatus
Cla007208
N
0.827
cassava6185.valid.m1
Manihot esculenta
cassava6185.valid.m1
N
0.827
Cucsa.031350
Cucumis sativus
Cucsa.031350
N
0.827
GSMUA_Achr3G29520_001
Musa acuminata
GSMUA_Achr3G29520_001
N
0.818
TCM_019459
Theobroma cacao
TCM_019459
N
0.818
Ciclev10013705m.g
Citrus clementina
Ciclev10013705m.g
N
0.818
orange1.1g022591m.g
Citrus sinensis
orange1.1g022591m.g
N
0.818
orange1.1g045357m.g
Citrus sinensis
orange1.1g045357m.g
N
0.818
GSMUA_Achr4G03700_001
Musa acuminata
GSMUA_Achr4G03700_001
N
0.816
GSMUA_Achr4G06820_001
Musa acuminata
GSMUA_Achr4G06820_001
N
0.816
PGSC0003DMG400012653
Solanum tuberosum
PGSC0003DMG400012653
N
0.816
Solyc02g085910.2
Solanum lycopersicum
Solyc02g085910.2
N
0.816
mgf010898m
Mimulus guttatus
mgf010898m
N
0.816
Aquca_026_00293
Aquilegia coerulea
Aquca_026_00293
N
0.816
GLYMA13G07590
Glycine max
GLYMA13G07590
N
0.808
MTR_7g007010
Medicago truncatula
MTR_7g007010
N
0.808
VIT_14s0006g02950
Vitis vinifera
VIT_14s0006g02950
N
0.808
Ciclev10016422m.g
Citrus clementina
Ciclev10016422m.g
N
0.808
gene10300-v1.0-hybrid
Fragaria vesca
gene10300-v1.0-hybrid
N
0.808
MDP0000136037
Malus domestica
MDP0000136037
N
0.808
PK03169.1
Cannabis sativa
PK03169.1
N
0.808
GLYMA08G48040
Glycine max
GLYMA08G48040
N
0.806
GSMUA_Achr9G21360_001
Musa acuminata
GSMUA_Achr9G21360_001
N
0.806
cassava60.valid.m1
Manihot esculenta
cassava60.valid.m1
N
0.806
Traes_4BL_D44ACD58E
Triticum aestivum
Traes_4BL_D44ACD58E
N
0.800
GSMUA_AchrUn_randomG00460_001
Musa acuminata
GSMUA_AchrUn_randomG00460_001
N
0.798
POPTR_0005s15670
Populus trichocarpa
POPTR_0005s15670
N
0.798
chr1.LjT23D08.90.nc
Lotus japonicus
chr1.LjT23D08.90.nc
N
0.798
GLYMA18G53440
Glycine max
GLYMA18G53440
N
0.796
GLYMA19G06280
Glycine max
GLYMA19G06280
N
0.796
POPTR_0008s11950
Populus trichocarpa
POPTR_0008s11950
N
0.796
POPTR_0010s13480
Populus trichocarpa
POPTR_0010s13480
N
0.796
cassava38982.m1
Manihot esculenta
cassava38982.m1
N
0.796
Eucgr.F02492
Eucalyptus grandis
Eucgr.F02492
N
0.796
PK04548.1
Cannabis sativa
PK04548.1
N
0.796
LjSGA_023437.1
Lotus japonicus
LjSGA_023437.1
N
0.796
PK04625.1
Cannabis sativa
PK04625.1
N
0.791
Bo3g055690
Brassica oleracea
Bo3g055690
N
0.788
Bra021433
Brassica rapa
Bra021433
N
0.788
POPTR_0004s09920
Populus trichocarpa
POPTR_0004s09920
N
0.788
PRUPE_ppa011233mg
Prunus persica
PRUPE_ppa011233mg
N
0.788
TCM_009888
Theobroma cacao
TCM_009888
N
0.788
Pm029059
Prunus mume
Pm029059
N
0.788
evm.TU.supercontig_3.514
Carica papaya
evm.TU.supercontig_3.514
N
0.788
Lus10028470.g
Linum usitatissimum
Lus10028470.g
N
0.788
SapurV1A.0315s0090
Salix purpurea
SapurV1A.0315s0090
N
0.788
GSMUA_Achr1G20970_001
Musa acuminata
GSMUA_Achr1G20970_001
N
0.786
Cla019264
Citrullus lanatus
Cla019264
N
0.786
Cucsa.199060
Cucumis sativus
Cucsa.199060
N
0.786
Ciclev10022068m.g
Citrus clementina
Ciclev10022068m.g
N
0.786
Eucgr.J01501
Eucalyptus grandis
Eucgr.J01501
N
0.786
gene03741-v1.0-hybrid
Fragaria vesca
gene03741-v1.0-hybrid
N
0.786
orange1.1g038007m.g
Citrus sinensis
orange1.1g038007m.g
N
0.786
Bo1g156310
Brassica oleracea
Bo1g156310
N
0.778
GSMUA_Achr9G00580_001
Musa acuminata
GSMUA_Achr9G00580_001
N
0.778
MTR_6g018270
Medicago truncatula
MTR_6g018270
N
0.778
Thhalv10021328m.g
Eutrema salsugineum
Thhalv10021328m.g
N
0.778
PGSC0003DMG400005719
Solanum tuberosum
PGSC0003DMG400005719
N
0.776
Solyc03g119530.2
Solanum lycopersicum
Solyc03g119530.2
N
0.776
Solyc05g009320.2
Solanum lycopersicum
Solyc05g009320.2
N
0.776
Cla020705
Citrullus lanatus
Cla020705
N
0.776
27524.m000293
Ricinus communis
27524.m000293
N
0.776
cassava43296.valid.m1
Manihot esculenta
cassava43296.valid.m1
N
0.776
Cucsa.283560
Cucumis sativus
Cucsa.283560
N
0.776
SapurV1A.0078s0410
Salix purpurea
SapurV1A.0078s0410
N
0.773
LBD41
Arabidopsis thaliana
AT3G02550
N
0.768
LBD41
Arabidopsis lyrata
fgenesh2_kg.3__191__AT3G02550.1
N
0.768
Bostr.1460s0172
Boechera stricta
Bostr.1460s0172
N
0.768
Cagra.1194s0049
Capsella grandiflora
Cagra.1194s0049
N
0.768
Carubv10015363m.g
Capsella rubella
Carubv10015363m.g
N
0.768
Pavir.Eb02390
Panicum virgatum
Pavir.Eb02390
N
0.768
Thhalv10019048m.g
Eutrema salsugineum
Thhalv10019048m.g
N
0.768
GRMZM2G060544
Zea mays
GRMZM2G060544
N
0.765
PGSC0003DMG400014547
Solanum tuberosum
PGSC0003DMG400014547
N
0.765
TCM_012338
Theobroma cacao
TCM_012338
N
0.765
VIT_17s0000g03720
Vitis vinifera
VIT_17s0000g03720
N
0.765
mgf011656m
Mimulus guttatus
mgf011656m
N
0.765
Pavir.Ea01295
Panicum virgatum
Pavir.Ea01295
N
0.765
Cagra.3364s0006
Capsella grandiflora
Cagra.3364s0006
N
0.763
Carubv10022391m.g
Capsella rubella
Carubv10022391m.g
N
0.763
Eucgr.K02222
Eucalyptus grandis
Eucgr.K02222
N
0.758
BGIOSGA001546
Oryza indica
BGIOSGA001546
N
0.755
OBART01G17510
Oryza barthii
OBART01G17510
N
0.755
OGLUM01G20320
Oryza glumaepatula
OGLUM01G20320
N
0.755
OMERI01G16320
Oryza meridionalis
OMERI01G16320
N
0.755
ONIVA01G19320
Oryza nivara
ONIVA01G19320
N
0.755
OPUNC01G18000
Oryza punctata
OPUNC01G18000
N
0.755
ORUFI01G19440
Oryza rufipogon
ORUFI01G19440
N
0.755
OS01G0511000
Oryza sativa
OS01G0511000
N
0.755
Sb03g007270
Sorghum bicolor
Sb03g007270
N
0.755
Bostr.26959s0040
Boechera stricta
Bostr.26959s0040
N
0.755
Bostr.2902s0344
Boechera stricta
Bostr.2902s0344
N
0.755
Gorai.002G217800
Gossypium raimondii
Gorai.002G217800
N
0.755
Pavir.J01483
Panicum virgatum
Pavir.J01483
N
0.755
Pavir.J11724
Panicum virgatum
Pavir.J11724
N
0.755
SapurV1A.0079s0150
Salix purpurea
SapurV1A.0079s0150
N
0.755
Thhalv10019494m.g
Eutrema salsugineum
Thhalv10019494m.g
N
0.755
GRMZM2G132693
Zea mays
GRMZM2G132693
N
0.753
Si004887m.g
Setaria italica
Si004887m.g
N
0.750
LBD40
Arabidopsis lyrata
Al_scaffold_0002_1337
N
0.747
LBD40
Arabidopsis thaliana
AT1G67100
N
0.747
GLYMA08G31143
Glycine max
GLYMA08G31143
N
0.747
GLYMA20G24950
Glycine max
GLYMA20G24950
N
0.747
MLOC_58304
Hordeum vulgare
MLOC_58304
N
0.747
Sb01g032580
Sorghum bicolor
Sb01g032580
N
0.747
Traes_2AL_450404EA6
Triticum aestivum
Traes_2AL_450404EA6
N
0.747
Traes_2BL_3A840DB921
Triticum aestivum
Traes_2BL_3A840DB921
N
0.747
Traes_2DL_9D8B5B436
Triticum aestivum
Traes_2DL_9D8B5B436
N
0.747
Ca_22996
Cicer arietinum
Ca_22996
N
0.747
Cagra.6164s0006
Capsella grandiflora
Cagra.6164s0006
N
0.747
Carubv10002654m.g
Capsella rubella
Carubv10002654m.g
N
0.747
Carubv10021721m.g
Capsella rubella
Carubv10021721m.g
N
0.747
Eucgr.G02321
Eucalyptus grandis
Eucgr.G02321
N
0.747
BGIOSGA002703
Oryza indica
BGIOSGA002703
N
0.745
LPERR01G01830
Leersia perrieri
LPERR01G01830
N
0.745
LPERR01G15290
Leersia perrieri
LPERR01G15290
N
0.745
OB01G11830
Oryza brachyantha
OB01G11830
N
0.745
OBART01G01940
Oryza barthii
OBART01G01940
N
0.745
OGLUM01G02100
Oryza glumaepatula
OGLUM01G02100
N
0.745
OMERI01G01380
Oryza meridionalis
OMERI01G01380
N
0.745
ONIVA01G02110
Oryza nivara
ONIVA01G02110
N
0.745
OPUNC01G01670
Oryza punctata
OPUNC01G01670
N
0.745
ORGLA01G0016600
Oryza glaberrima
ORGLA01G0016600
N
0.745
ORUFI01G02010
Oryza rufipogon
ORUFI01G02010
N
0.745
Sb09g030780
Sorghum bicolor
Sb09g030780
N
0.745
Si022660m.g
Setaria italica
Si022660m.g
N
0.745
Gorai.005G190300
Gossypium raimondii
Gorai.005G190300
N
0.745
Bo6g106960
Brassica oleracea
Bo6g106960
N
0.742
Bra004315
Brassica rapa
Bra004315
N
0.742
LBD42
Arabidopsis thaliana
AT1G68510
N
0.737
BRADI4G16740
Brachypodium distachyon
BRADI4G16740
N
0.737
BRADI4G16750
Brachypodium distachyon
BRADI4G16750
N
0.737
LBD42
Arabidopsis lyrata
fgenesh2_kg.2__1100__AT1G68510.1
N
0.737
VIT_01s0011g03540
Vitis vinifera
VIT_01s0011g03540
N
0.737
Bostr.26959s0198
Boechera stricta
Bostr.26959s0198
N
0.737
Cagra.6845s0054
Capsella grandiflora
Cagra.6845s0054
N
0.737
Carubv10000015m.g
Capsella rubella
Carubv10000015m.g
N
0.737
Pavir.J00526
Panicum virgatum
Pavir.J00526
N
0.737
TRAES3BF008500030CFD_g
Triticum aestivum
TRAES3BF008500030CFD_g
N
0.735
TRAES3BF008600030CFD_g
Triticum aestivum
TRAES3BF008600030CFD_g
N
0.735
Bo2g055410
Brassica oleracea
Bo2g055410
N
0.727
GSMUA_Achr2G14600_001
Musa acuminata
GSMUA_Achr2G14600_001
N
0.727
MDP0000233303
Malus domestica
MDP0000233303
N
0.727
Si002412m.g
Setaria italica
Si002412m.g
N
0.724
Pavir.Ea00650
Panicum virgatum
Pavir.Ea00650
N
0.724
VIT_01s0011g03530
Vitis vinifera
VIT_01s0011g03530
N
0.722
GSMUA_Achr2G22720_001
Musa acuminata
GSMUA_Achr2G22720_001
N
0.718
evm.TU.supercontig_1.42
Carica papaya
evm.TU.supercontig_1.42
N
0.717
Gorai.006G061200
Gossypium raimondii
Gorai.006G061200
N
0.717
GRMZM2G386674
Zea mays
GRMZM2G386674
N
0.714
mgf017960m
Mimulus guttatus
mgf017960m
N
0.714
mgf021653m
Mimulus guttatus
mgf021653m
N
0.708
GRMZM2G073044
Zea mays
GRMZM2G073044
N
0.704
OLONG_008015
Oryza longistaminata
OLONG_008015
N
0.704
LPERR07G17900
Leersia perrieri
LPERR07G17900
N
0.703