CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb00487
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.Eb00487
T258899_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb00487.1.p
MADS box
10
54
WITNDSARRAAYKKRCKGLMKKTSELATLCGVKACVVVYGEGGAQ
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J14267
Panicum virgatum
Pavir.J14267
N
0.756
GRMZM5G853066
Zea mays
GRMZM5G853066
N
0.733
GRMZM5G839969
Zea mays
GRMZM5G839969
N
0.711
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.711
Pavir.Ib03850
Panicum virgatum
Pavir.Ib03850
N
0.711
Si004925m.g
Setaria italica
Si004925m.g
N
0.702
evm.TU.supercontig_22.66
Carica papaya
evm.TU.supercontig_22.66
N
0.700