Pvit_04402 (Pogona vitticeps)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pvit_04402 T261312_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.725 0.725
Mbd2
M09258_2.00 		Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_04402 MBD 56 100
Pvit_04402 MBD 106 174

Links

Other MBD family TFs
Other Pogona vitticeps TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R000663 Aptenodytes forsteri Afo_R000663 I 0.989
ENSAPLG00000010058 Anas platyrhynchos ENSAPLG00000010058 I 0.969
ENSTSYG00000013361 Tarsius syrichta ENSTSYG00000013361 I 0.967
ENSFCAG00000022047 Felis catus ENSFCAG00000022047 I 0.957
ENSP00000256429 Macaca fascicularis ENSP00000256429 I 0.957
MBD2 Microcebus murinus ENSMICG00000008970 I 0.947
ENSMEUG00000016480 Macropus eugenii ENSMEUG00000016480 I 0.946
Cmyd_10012649 Chelonia mydas Cmyd_10012649 I 0.895
ENSVPAG00000012298 Vicugna pacos ENSVPAG00000012298 N 0.887
ENSMGAG00000009222 Meleagris gallopavo ENSMGAG00000009222 N 0.877
ENSOARG00000004770 Ovis aries ENSOARG00000004770 I 0.840
MBD3 Gasterosteus aculeatus ENSGACG00000012755 I 0.827
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.805
mbd3b Danio rerio ENSDARG00000042029 I 0.805
mbd3a Danio rerio ENSDARG00000061774 I 0.805
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I 0.795
ENSP00000256429-D1 Bos grunniens ENSP00000256429-D1 I 0.776
ENSOANG00000030623 Ornithorhynchus anatinus ENSOANG00000030623 I 0.774
ENSOARG00000012359 Ovis aries ENSOARG00000012359 I 0.772
Mbd3 Mus musculus ENSMUSG00000035478 N 0.764
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I 0.762
MBD3 Felis catus ENSFCAG00000000763 I 0.753
ENSGMOG00000008953 Gadus morhua ENSGMOG00000008953 I 0.753
MBD3 Equus caballus ENSECAG00000015485 I 0.738
ENSCSAG00000018106 Chlorocebus sabaeus ENSCSAG00000018106 I 0.732
MBD3 Ochotona princeps ENSOPRG00000008719 I 0.729
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N 0.725
ENSLOCG00000006043 Lepisosteus oculatus ENSLOCG00000006043 N 0.722
Ogr03458 Ophisaurus gracilis Ogr03458 I 0.721
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I 0.720
MBD3 Canis familiaris ENSCAFG00000019503 N 0.719
MBD2 Cavia porcellus ENSCPOG00000006832 I 0.717
ENSACAG00000008739 Anolis carolinensis ENSACAG00000008739 I 0.713
ENSECAG00000022368 Equus caballus ENSECAG00000022368 I 0.709
ENSPPYG00000009325 Pongo abelii ENSPPYG00000009325 I 0.709