Bra025300 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra025300 T267981_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.851 0.957
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.825 0.935
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.742 0.839
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.742 0.839
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.742 0.839
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.661 0.763
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.661 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025300.1-P Myb 22 69
Bra025300.1-P Myb 75 120

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g008370 Brassica oleracea Bo9g008370 I 0.909
Bra039067 Brassica rapa Bra039067 I 0.909
MYB21 Arabidopsis thaliana AT3G27810 I 0.884
Bo7g085930 Brassica oleracea Bo7g085930 I 0.884
ATMYB21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000445 I 0.884
Bostr.0556s0458 Boechera stricta Bostr.0556s0458 I 0.884
Cagra.11216s0001 Capsella grandiflora Cagra.11216s0001 I 0.884
Carubv10018700m.g Capsella rubella Carubv10018700m.g I 0.884
Thhalv10004857m.g Eutrema salsugineum Thhalv10004857m.g I 0.884
MYB24 Arabidopsis thaliana AT5G40350 D 0.851
evm.TU.supercontig_186.7 Carica papaya evm.TU.supercontig_186.7 I 0.838
gene28435-v1.0-hybrid Fragaria vesca gene28435-v1.0-hybrid I 0.838
MDP0000344978 Malus domestica MDP0000344978 I 0.838
PGSC0003DMG400000485 Solanum tuberosum PGSC0003DMG400000485 I 0.836
MTR_7g035075 Medicago truncatula MTR_7g035075 I 0.835
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.831
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.831
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.831
Solyc02g067760.2 Solanum lycopersicum Solyc02g067760.2 I 0.830
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.829
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.829
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.829
TCM_016901 Theobroma cacao TCM_016901 I 0.829
Pm015692 Prunus mume Pm015692 I 0.829
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.829
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.825
MYB05_ANTMA Antirrhinum majus MYB05_ANTMA D 0.825
GLYMA05G08690 Glycine max GLYMA05G08690 I 0.823
GLYMA19G00930 Glycine max GLYMA19G00930 I 0.823
Cucsa.339770 Cucumis sativus Cucsa.339770 I 0.821
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.820
mgf000555m Mimulus guttatus mgf000555m I 0.814
POPTR_0001s35200 Populus trichocarpa POPTR_0001s35200 I 0.809
Bostr.7200s0008 Boechera stricta Bostr.7200s0008 I 0.809
Carubv10007254m.g Capsella rubella Carubv10007254m.g I 0.809
Thhalv10027930m.g Eutrema salsugineum Thhalv10027930m.g I 0.809
Lus10014557.g Linum usitatissimum Lus10014557.g I 0.808
Lus10032129.g Linum usitatissimum Lus10032129.g I 0.808
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.805
Cla017370 Citrullus lanatus Cla017370 I 0.804
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.799
Aquca_002_00135 Aquilegia coerulea Aquca_002_00135 I 0.798
VIT_14s0066g01090 Vitis vinifera VIT_14s0066g01090 I 0.797
Cla010584 Citrullus lanatus Cla010584 I 0.788
Cucsa.011440 Cucumis sativus Cucsa.011440 I 0.788
cassava14740.m1 Manihot esculenta cassava14740.m1 I 0.779
GSMUA_Achr1G27270_001 Musa acuminata GSMUA_Achr1G27270_001 I 0.778
SapurV1A.0358s0050 Salix purpurea SapurV1A.0358s0050 I 0.775
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.766
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.756
GSMUA_Achr6G27290_001 Musa acuminata GSMUA_Achr6G27290_001 I 0.755
ATMYB57 Arabidopsis lyrata Al_scaffold_0003_59 I 0.742
MYB57 Arabidopsis thaliana AT3G01530 D 0.742
GSMUA_Achr9G07000_001 Musa acuminata GSMUA_Achr9G07000_001 I 0.742
Bostr.1460s0057 Boechera stricta Bostr.1460s0057 I 0.742
Cagra.1561s0019 Capsella grandiflora Cagra.1561s0019 I 0.742
Carubv10016245m.g Capsella rubella Carubv10016245m.g I 0.742
Bo3g055110 Brassica oleracea Bo3g055110 I 0.741
Bra001005 Brassica rapa Bra001005 I 0.733
Bo5g155050 Brassica oleracea Bo5g155050 I 0.732
Bra039108 Brassica rapa Bra039108 I 0.719
gene03712-v1.0-hybrid Fragaria vesca gene03712-v1.0-hybrid I 0.713
MDP0000934638 Malus domestica MDP0000934638 I 0.713
Cucsa.252400 Cucumis sativus Cucsa.252400 I 0.712
GLYMA03G38070 Glycine max GLYMA03G38070 I 0.711
GLYMA08G04670 Glycine max GLYMA08G04670 I 0.705
PK28164.1 Cannabis sativa PK28164.1 I 0.704
Lus10009037.g Linum usitatissimum Lus10009037.g I 0.700
GLYMA10G41930 Glycine max GLYMA10G41930 I 0.692
PGSC0003DMG400005641 Solanum tuberosum PGSC0003DMG400005641 I 0.691
Solyc03g119370.1 Solanum lycopersicum Solyc03g119370.1 I 0.691
AMTR_s00003p00219710 Amborella trichopoda AMTR_s00003p00219710 I 0.690
OB05G33720 Oryza brachyantha OB05G33720 I 0.690
GLYMA19G40670 Glycine max GLYMA19G40670 I 0.689
Cla022143 Citrullus lanatus Cla022143 I 0.687
GLYMA20G25110 Glycine max GLYMA20G25110 I 0.682
MTR_1g110460 Medicago truncatula MTR_1g110460 I 0.682
Ca_05503 Cicer arietinum Ca_05503 I 0.682
LjT44F11.120.nd Lotus japonicus LjT44F11.120.nd I 0.682
Bo7g050560 Brassica oleracea Bo7g050560 I 0.674
Bra012482 Brassica rapa Bra012482 I 0.674
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.673
PRUPE_ppa009143mg Prunus persica PRUPE_ppa009143mg I 0.673
Solyc05g009230.1 Solanum lycopersicum Solyc05g009230.1 I 0.673
VIT_01s0011g03730 Vitis vinifera VIT_01s0011g03730 I 0.673
Pm029082 Prunus mume Pm029082 I 0.673
PK13281.1 Cannabis sativa PK13281.1 I 0.673
F775_08129 Aegilops tauschii F775_08129 I 0.672
GLYMA09G31570 Glycine max GLYMA09G31570 I 0.672
MLOC_6821 Hordeum vulgare MLOC_6821 I 0.672
Traes_5BS_95A52A87F Triticum aestivum Traes_5BS_95A52A87F I 0.672
Traes_5DS_DE2C70E4C Triticum aestivum Traes_5DS_DE2C70E4C I 0.672
TCM_009642 Theobroma cacao TCM_009642 I 0.670
evm.TU.supercontig_49.71 Carica papaya evm.TU.supercontig_49.71 I 0.670
evm.TU.supercontig_798.1 Carica papaya evm.TU.supercontig_798.1 I 0.670
Gorai.002G218600 Gossypium raimondii Gorai.002G218600 I 0.670
Lus10041435.g Linum usitatissimum Lus10041435.g I 0.670
Bo5g043390 Brassica oleracea Bo5g043390 I 0.669
Bo6g097180 Brassica oleracea Bo6g097180 I 0.669
GSMUA_Achr5G21090_001 Musa acuminata GSMUA_Achr5G21090_001 I 0.669
AMTR_s00079p00140660 Amborella trichopoda AMTR_s00079p00140660 I 0.668
cassava12704.valid.m1 Manihot esculenta cassava12704.valid.m1 I 0.667
GLYMA05G35050 Glycine max GLYMA05G35050 I 0.666
GSMUA_AchrUn_randomG08600_001 Musa acuminata GSMUA_AchrUn_randomG08600_001 I 0.666
POPTR_0010s13290 Populus trichocarpa POPTR_0010s13290 I 0.666
Eucgr.H04082 Eucalyptus grandis Eucgr.H04082 I 0.666
SapurV1A.0078s0260 Salix purpurea SapurV1A.0078s0260 I 0.666
SapurV1A.0079s0020 Salix purpurea SapurV1A.0079s0020 I 0.666
GSMUA_Achr3G21060_001 Musa acuminata GSMUA_Achr3G21060_001 I 0.665
MTR_1g086530 Medicago truncatula MTR_1g086530 I 0.665
Lus10034338.g Linum usitatissimum Lus10034338.g I 0.665
GSMUA_Achr10G19840_001 Musa acuminata GSMUA_Achr10G19840_001 I 0.664
GSMUA_Achr3G01370_001 Musa acuminata GSMUA_Achr3G01370_001 I 0.664
POPTR_0012s05200 Populus trichocarpa POPTR_0012s05200 I 0.664
POPTR_0015s03770 Populus trichocarpa POPTR_0015s03770 I 0.664
evm.TU.supercontig_3.501 Carica papaya evm.TU.supercontig_3.501 I 0.664
evm.TU.supercontig_3.502 Carica papaya evm.TU.supercontig_3.502 I 0.664
SapurV1A.0530s0020 Salix purpurea SapurV1A.0530s0020 I 0.664
SapurV1A.0989s0120 Salix purpurea SapurV1A.0989s0120 I 0.664
SapurV1A.1621s0010 Salix purpurea SapurV1A.1621s0010 I 0.664
SapurV1A.2885s0020 Salix purpurea SapurV1A.2885s0020 I 0.664
Thhalv10008403m.g Eutrema salsugineum Thhalv10008403m.g I 0.663
GSMUA_Achr4G19990_001 Musa acuminata GSMUA_Achr4G19990_001 I 0.662
POPTR_0008s12130 Populus trichocarpa POPTR_0008s12130 I 0.662
VIT_17s0000g03560 Vitis vinifera VIT_17s0000g03560 I 0.662
MYB62 Arabidopsis thaliana AT1G68320 D 0.661
BGIOSGA002469 Oryza indica BGIOSGA002469 I 0.661
Bo2g057760 Brassica oleracea Bo2g057760 I 0.661
Bo6g106730 Brassica oleracea Bo6g106730 I 0.661
Bra004297 Brassica rapa Bra004297 I 0.661
MYB62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001171 I 0.661
GRMZM2G096358 Zea mays GRMZM2G096358 I 0.661
GRMZM2G162709 Zea mays GRMZM2G162709 I 0.661
LPERR01G01750 Leersia perrieri LPERR01G01750 I 0.661
OB01G11750 Oryza brachyantha OB01G11750 I 0.661
OBART01G01830 Oryza barthii OBART01G01830 I 0.661
OGLUM01G02010 Oryza glumaepatula OGLUM01G02010 I 0.661
OLONG_008024 Oryza longistaminata OLONG_008024 I 0.661
OMERI01G01310 Oryza meridionalis OMERI01G01310 I 0.661
ONIVA01G01990 Oryza nivara ONIVA01G01990 I 0.661
ORGLA01G0016500 Oryza glaberrima ORGLA01G0016500 I 0.661
Sb03g007360 Sorghum bicolor Sb03g007360 I 0.661
Cucsa.365190 Cucumis sativus Cucsa.365190 I 0.661
Pavir.Ea00660 Panicum virgatum Pavir.Ea00660 I 0.661
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.661
Thhalv10018962m.g Eutrema salsugineum Thhalv10018962m.g I 0.661