PK28164.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK28164.1 T290489_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.738 0.936
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.735 0.923
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.699 0.859
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.699 0.859
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.699 0.859
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK28164.1 Myb 1 33
PK28164.1 Myb 39 84

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla017370 Citrullus lanatus Cla017370 I 0.769
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.760
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.760
POPTR_0001s35200 Populus trichocarpa POPTR_0001s35200 I 0.760
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.760
TCM_016901 Theobroma cacao TCM_016901 I 0.760
Pm015692 Prunus mume Pm015692 I 0.760
Bostr.7200s0008 Boechera stricta Bostr.7200s0008 I 0.760
Carubv10007254m.g Capsella rubella Carubv10007254m.g I 0.760
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.760
Thhalv10027930m.g Eutrema salsugineum Thhalv10027930m.g I 0.760
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.759
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.758
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.758
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.758
Cucsa.011440 Cucumis sativus Cucsa.011440 I 0.756
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.756
evm.TU.supercontig_186.7 Carica papaya evm.TU.supercontig_186.7 I 0.751
gene28435-v1.0-hybrid Fragaria vesca gene28435-v1.0-hybrid I 0.751
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.751
MDP0000344978 Malus domestica MDP0000344978 I 0.751
GLYMA05G08690 Glycine max GLYMA05G08690 I 0.750
GLYMA19G00930 Glycine max GLYMA19G00930 I 0.750
MTR_7g035075 Medicago truncatula MTR_7g035075 I 0.748
Cla010584 Citrullus lanatus Cla010584 I 0.747
mgf000555m Mimulus guttatus mgf000555m I 0.747
SapurV1A.0358s0050 Salix purpurea SapurV1A.0358s0050 I 0.747
PGSC0003DMG400000485 Solanum tuberosum PGSC0003DMG400000485 I 0.745
Solyc02g067760.2 Solanum lycopersicum Solyc02g067760.2 I 0.743
cassava14740.m1 Manihot esculenta cassava14740.m1 I 0.741
VIT_14s0066g01090 Vitis vinifera VIT_14s0066g01090 I 0.740
MYB05_ANTMA Antirrhinum majus MYB05_ANTMA D 0.738
Lus10014557.g Linum usitatissimum Lus10014557.g I 0.738
Lus10032129.g Linum usitatissimum Lus10032129.g I 0.738
MYB24 Arabidopsis thaliana AT5G40350 D 0.735
MDP0000812154 Malus domestica MDP0000812154 I 0.735
Cucsa.339770 Cucumis sativus Cucsa.339770 I 0.734
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.730
MYB21 Arabidopsis thaliana AT3G27810 I 0.729
Bo7g085930 Brassica oleracea Bo7g085930 I 0.729
ATMYB21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000445 I 0.729
Bostr.0556s0458 Boechera stricta Bostr.0556s0458 I 0.729
Cagra.11216s0001 Capsella grandiflora Cagra.11216s0001 I 0.729
Carubv10018700m.g Capsella rubella Carubv10018700m.g I 0.729
Thhalv10004857m.g Eutrema salsugineum Thhalv10004857m.g I 0.729
GLYMA08G04670 Glycine max GLYMA08G04670 I 0.716
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.710
Aquca_002_00135 Aquilegia coerulea Aquca_002_00135 I 0.707
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.707
Bo9g008370 Brassica oleracea Bo9g008370 I 0.704
Bra025300 Brassica rapa Bra025300 I 0.704
Bra039067 Brassica rapa Bra039067 I 0.704
ATMYB57 Arabidopsis lyrata Al_scaffold_0003_59 I 0.699
MYB57 Arabidopsis thaliana AT3G01530 D 0.699
Bostr.1460s0057 Boechera stricta Bostr.1460s0057 I 0.699
Cagra.1561s0019 Capsella grandiflora Cagra.1561s0019 I 0.699
Carubv10016245m.g Capsella rubella Carubv10016245m.g I 0.699
ONIVA04G00840 Oryza nivara ONIVA04G00840 I 0.698
mgf001247m Mimulus guttatus mgf001247m N 0.696
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.689
Bo3g055110 Brassica oleracea Bo3g055110 I 0.688
GSMUA_Achr6G27290_001 Musa acuminata GSMUA_Achr6G27290_001 I 0.688
GSMUA_Achr1G27270_001 Musa acuminata GSMUA_Achr1G27270_001 I 0.687
gene03712-v1.0-hybrid Fragaria vesca gene03712-v1.0-hybrid I 0.686
MDP0000934638 Malus domestica MDP0000934638 I 0.686
Bo5g155050 Brassica oleracea Bo5g155050 I 0.680
Bra001005 Brassica rapa Bra001005 I 0.680
GLYMA05G35050 Glycine max GLYMA05G35050 I 0.677
PGSC0003DMG400005641 Solanum tuberosum PGSC0003DMG400005641 I 0.677
Solyc03g119370.1 Solanum lycopersicum Solyc03g119370.1 I 0.677
GLYMA09G31570 Glycine max GLYMA09G31570 I 0.672
Traes_7AS_2EE7C2628 Triticum aestivum Traes_7AS_2EE7C2628 I 0.667
Bra039108 Brassica rapa Bra039108 I 0.666
GLYMA10G41930 Glycine max GLYMA10G41930 I 0.666
GLYMA07G10321 Glycine max GLYMA07G10321 I 0.662
chr4.CM0042.760.nc Lotus japonicus chr4.CM0042.760.nc I 0.661