Bra039108 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra039108 T268139_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.850 0.946
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.850 0.946
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.850 0.946
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.782 0.828
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.757 0.839
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.690 0.742
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.690 0.742
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.683 0.720
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.683 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039108.1-P Myb 25 72
Bra039108.1-P Myb 78 123

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g155050 Brassica oleracea Bo5g155050 I 0.875
ATMYB57 Arabidopsis lyrata Al_scaffold_0003_59 I 0.868
Bostr.1460s0057 Boechera stricta Bostr.1460s0057 I 0.868
Cagra.1561s0019 Capsella grandiflora Cagra.1561s0019 I 0.868
Carubv10016245m.g Capsella rubella Carubv10016245m.g I 0.868
Bo3g055110 Brassica oleracea Bo3g055110 I 0.866
Bra001005 Brassica rapa Bra001005 I 0.858
MYB57 Arabidopsis thaliana AT3G01530 D 0.850
GLYMA05G08690 Glycine max GLYMA05G08690 I 0.805
GLYMA19G00930 Glycine max GLYMA19G00930 I 0.805
mgf000555m Mimulus guttatus mgf000555m I 0.799
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.797
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.797
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.797
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.797
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.795
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.795
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.795
TCM_016901 Theobroma cacao TCM_016901 I 0.795
Pm015692 Prunus mume Pm015692 I 0.795
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.795
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.794
MTR_7g035075 Medicago truncatula MTR_7g035075 I 0.789
evm.TU.supercontig_186.7 Carica papaya evm.TU.supercontig_186.7 I 0.786
gene28435-v1.0-hybrid Fragaria vesca gene28435-v1.0-hybrid I 0.786
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.786
MDP0000344978 Malus domestica MDP0000344978 I 0.786
PGSC0003DMG400000485 Solanum tuberosum PGSC0003DMG400000485 I 0.784
MYB05_ANTMA Antirrhinum majus MYB05_ANTMA D 0.782
Solyc02g067760.2 Solanum lycopersicum Solyc02g067760.2 I 0.779
Cucsa.339770 Cucumis sativus Cucsa.339770 I 0.779
POPTR_0001s35200 Populus trichocarpa POPTR_0001s35200 I 0.778
Bostr.7200s0008 Boechera stricta Bostr.7200s0008 I 0.774
Carubv10007254m.g Capsella rubella Carubv10007254m.g I 0.774
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.774
Thhalv10027930m.g Eutrema salsugineum Thhalv10027930m.g I 0.774
Lus10014557.g Linum usitatissimum Lus10014557.g I 0.773
Lus10032129.g Linum usitatissimum Lus10032129.g I 0.773
Cla010584 Citrullus lanatus Cla010584 I 0.767
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.765
VIT_14s0066g01090 Vitis vinifera VIT_14s0066g01090 I 0.762
Cucsa.011440 Cucumis sativus Cucsa.011440 I 0.758
MYB24 Arabidopsis thaliana AT5G40350 D 0.757
Aquca_002_00135 Aquilegia coerulea Aquca_002_00135 I 0.754
Cla017370 Citrullus lanatus Cla017370 I 0.752
GSMUA_Achr6G27290_001 Musa acuminata GSMUA_Achr6G27290_001 I 0.750
cassava14740.m1 Manihot esculenta cassava14740.m1 I 0.746
SapurV1A.0358s0050 Salix purpurea SapurV1A.0358s0050 I 0.744
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.738
GSMUA_Achr1G27270_001 Musa acuminata GSMUA_Achr1G27270_001 I 0.735
gene03712-v1.0-hybrid Fragaria vesca gene03712-v1.0-hybrid I 0.721
MDP0000934638 Malus domestica MDP0000934638 I 0.721
PGSC0003DMG400005641 Solanum tuberosum PGSC0003DMG400005641 I 0.720
Solyc03g119370.1 Solanum lycopersicum Solyc03g119370.1 I 0.720
MYB21 Arabidopsis thaliana AT3G27810 I 0.719
Bo7g085930 Brassica oleracea Bo7g085930 I 0.719
Bo9g008370 Brassica oleracea Bo9g008370 I 0.719
Bra025300 Brassica rapa Bra025300 I 0.719
Bra039067 Brassica rapa Bra039067 I 0.719
ATMYB21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000445 I 0.719
Bostr.0556s0458 Boechera stricta Bostr.0556s0458 I 0.719
Cagra.11216s0001 Capsella grandiflora Cagra.11216s0001 I 0.719
Carubv10018700m.g Capsella rubella Carubv10018700m.g I 0.719
Thhalv10004857m.g Eutrema salsugineum Thhalv10004857m.g I 0.719
GLYMA09G31570 Glycine max GLYMA09G31570 I 0.716
Thhalv10008403m.g Eutrema salsugineum Thhalv10008403m.g I 0.716
GLYMA07G10321 Glycine max GLYMA07G10321 I 0.706
Bo7g050560 Brassica oleracea Bo7g050560 I 0.704
Bra012482 Brassica rapa Bra012482 I 0.704
GSMUA_Achr9G07000_001 Musa acuminata GSMUA_Achr9G07000_001 I 0.702
GLYMA08G04670 Glycine max GLYMA08G04670 I 0.701
Bo5g043390 Brassica oleracea Bo5g043390 I 0.699
BGIOSGA018863 Oryza indica BGIOSGA018863 I 0.697
GRMZM2G160840 Zea mays GRMZM2G160840 I 0.697
OGLUM05G02350 Oryza glumaepatula OGLUM05G02350 I 0.697
ONIVA05G02220 Oryza nivara ONIVA05G02220 I 0.697
OPUNC05G02190 Oryza punctata OPUNC05G02190 I 0.697
ORGLA05G0022200 Oryza glaberrima ORGLA05G0022200 I 0.697
ORUFI05G02420 Oryza rufipogon ORUFI05G02420 I 0.697
GLYMA09G03690 Glycine max GLYMA09G03690 I 0.695
GLYMA15G14620 Glycine max GLYMA15G14620 I 0.695
MTR_2g033170 Medicago truncatula MTR_2g033170 I 0.695
GLYMA10G41930 Glycine max GLYMA10G41930 I 0.691
MYB62 Arabidopsis thaliana AT1G68320 D 0.690
Bo2g057760 Brassica oleracea Bo2g057760 I 0.690
Bo6g106730 Brassica oleracea Bo6g106730 I 0.690
Bra004297 Brassica rapa Bra004297 I 0.690
MYB62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001171 I 0.690
Bostr.12659s0423 Boechera stricta Bostr.12659s0423 I 0.690
Cagra.2231s0026 Capsella grandiflora Cagra.2231s0026 I 0.690
Thhalv10018962m.g Eutrema salsugineum Thhalv10018962m.g I 0.690
Bo6g097180 Brassica oleracea Bo6g097180 I 0.689
Bra033948 Brassica rapa Bra033948 I 0.689
PRUPE_ppa008877mg Prunus persica PRUPE_ppa008877mg I 0.689
Pm025177 Prunus mume Pm025177 I 0.689
MDP0000259898 Malus domestica MDP0000259898 I 0.689
POPTR_0014s11230 Populus trichocarpa POPTR_0014s11230 I 0.687
AMTR_s00079p00140660 Amborella trichopoda AMTR_s00079p00140660 I 0.686
GSMUA_Achr3G21060_001 Musa acuminata GSMUA_Achr3G21060_001 I 0.686
PRUPE_ppa025672mg Prunus persica PRUPE_ppa025672mg I 0.686
Aquca_003_00440 Aquilegia coerulea Aquca_003_00440 I 0.686
gene05018-v1.0-hybrid Fragaria vesca gene05018-v1.0-hybrid I 0.686
MDP0000274300 Malus domestica MDP0000274300 I 0.686
30076.m004607 Ricinus communis 30076.m004607 I 0.685
GSMUA_AchrUn_randomG08600_001 Musa acuminata GSMUA_AchrUn_randomG08600_001 I 0.684
POPTR_0010s13290 Populus trichocarpa POPTR_0010s13290 I 0.684
Cla008412 Citrullus lanatus Cla008412 I 0.684
SapurV1A.0078s0260 Salix purpurea SapurV1A.0078s0260 I 0.684
SapurV1A.0079s0020 Salix purpurea SapurV1A.0079s0020 I 0.684
MYB116 Arabidopsis thaliana AT1G25340 D 0.683
Gorai.008G287100 Gossypium raimondii Gorai.008G287100 I 0.683
BGIOSGA002469 Oryza indica BGIOSGA002469 I 0.682
BGIOSGA035999 Oryza indica BGIOSGA035999 I 0.682
GRMZM2G096358 Zea mays GRMZM2G096358 I 0.682
GRMZM2G143046 Zea mays GRMZM2G143046 I 0.682
GRMZM2G162709 Zea mays GRMZM2G162709 I 0.682
GSMUA_Achr3G01370_001 Musa acuminata GSMUA_Achr3G01370_001 I 0.682
GSMUA_Achr8G18460_001 Musa acuminata GSMUA_Achr8G18460_001 I 0.682
LPERR01G01750 Leersia perrieri LPERR01G01750 I 0.682
OB01G11750 Oryza brachyantha OB01G11750 I 0.682
OB11G27320 Oryza brachyantha OB11G27320 I 0.682
OB12G22880 Oryza brachyantha OB12G22880 I 0.682
OBART01G01830 Oryza barthii OBART01G01830 I 0.682
OGLUM01G02010 Oryza glumaepatula OGLUM01G02010 I 0.682
OLONG_008024 Oryza longistaminata OLONG_008024 I 0.682
OMERI01G01310 Oryza meridionalis OMERI01G01310 I 0.682
ONIVA01G01990 Oryza nivara ONIVA01G01990 I 0.682
ORGLA01G0016500 Oryza glaberrima ORGLA01G0016500 I 0.682
ORGLA12G0140200 Oryza glaberrima ORGLA12G0140200 I 0.682
ORUFI11G24630 Oryza rufipogon ORUFI11G24630 I 0.682
ORUFI12G17730 Oryza rufipogon ORUFI12G17730 I 0.682
JAMYB Oryza sativa OS11G0684000 I 0.682
Sb03g007360 Sorghum bicolor Sb03g007360 I 0.682
Sb08g018370 Sorghum bicolor Sb08g018370 I 0.682
Si022831m.g Setaria italica Si022831m.g I 0.682
Pavir.Cb00499 Panicum virgatum Pavir.Cb00499 I 0.682
Pavir.Ea00660 Panicum virgatum Pavir.Ea00660 I 0.682
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.682
SapurV1A.0294s0070 Salix purpurea SapurV1A.0294s0070 I 0.682
BGIOSGA020382 Oryza indica BGIOSGA020382 I 0.681
GLYMA20G25110 Glycine max GLYMA20G25110 I 0.681
MTR_1g110460 Medicago truncatula MTR_1g110460 I 0.681
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.681
Solyc05g009230.1 Solanum lycopersicum Solyc05g009230.1 I 0.681
TCM_009642 Theobroma cacao TCM_009642 I 0.681
VIT_01s0011g03730 Vitis vinifera VIT_01s0011g03730 I 0.681
Ca_05503 Cicer arietinum Ca_05503 I 0.681
Cucsa.213510 Cucumis sativus Cucsa.213510 I 0.681
Cucsa.365190 Cucumis sativus Cucsa.365190 I 0.681
evm.TU.supercontig_49.71 Carica papaya evm.TU.supercontig_49.71 I 0.681
evm.TU.supercontig_798.1 Carica papaya evm.TU.supercontig_798.1 I 0.681
Gorai.002G218600 Gossypium raimondii Gorai.002G218600 I 0.681
Lus10041435.g Linum usitatissimum Lus10041435.g I 0.681
PK13281.1 Cannabis sativa PK13281.1 I 0.681
LjT44F11.120.nd Lotus japonicus LjT44F11.120.nd I 0.681
Bra004041 Brassica rapa Bra004041 I 0.680
GSMUA_Achr1G21020_001 Musa acuminata GSMUA_Achr1G21020_001 I 0.680
GSMUA_Achr5G21090_001 Musa acuminata GSMUA_Achr5G21090_001 I 0.680
POPTR_0008s12130 Populus trichocarpa POPTR_0008s12130 I 0.680
VIT_17s0000g03560 Vitis vinifera VIT_17s0000g03560 I 0.680
cassava33046.m1 Manihot esculenta cassava33046.m1 I 0.680
PK22268.1 Cannabis sativa PK22268.1 I 0.680
BRADI2G01960 Brachypodium distachyon BRADI2G01960 I 0.679
GSMUA_Achr2G22640_001 Musa acuminata GSMUA_Achr2G22640_001 I 0.679
Cagra.1111s0025 Capsella grandiflora Cagra.1111s0025 I 0.679
Carubv10021411m.g Capsella rubella Carubv10021411m.g I 0.679
AMTR_s00003p00219710 Amborella trichopoda AMTR_s00003p00219710 I 0.677
OMERI05G02430 Oryza meridionalis OMERI05G02430 I 0.677
cassava46139.m1 Manihot esculenta cassava46139.m1 I 0.677
F775_17094 Aegilops tauschii F775_17094 I 0.676
GSMUA_Achr6G09760_001 Musa acuminata GSMUA_Achr6G09760_001 I 0.676
Traes_4BS_F83CB32DD Triticum aestivum Traes_4BS_F83CB32DD I 0.676
Traes_4DS_2A5B4C4C4 Triticum aestivum Traes_4DS_2A5B4C4C4 I 0.676
Cucsa.121500 Cucumis sativus Cucsa.121500 I 0.676
Lus10034338.g Linum usitatissimum Lus10034338.g I 0.676
POPTR_0012s05200 Populus trichocarpa POPTR_0012s05200 I 0.675
POPTR_0015s03770 Populus trichocarpa POPTR_0015s03770 I 0.675
cassava12704.valid.m1 Manihot esculenta cassava12704.valid.m1 I 0.675
evm.TU.supercontig_3.501 Carica papaya evm.TU.supercontig_3.501 I 0.675
evm.TU.supercontig_3.502 Carica papaya evm.TU.supercontig_3.502 I 0.675
SapurV1A.0530s0020 Salix purpurea SapurV1A.0530s0020 I 0.675
SapurV1A.0989s0120 Salix purpurea SapurV1A.0989s0120 I 0.675
SapurV1A.1621s0010 Salix purpurea SapurV1A.1621s0010 I 0.675
SapurV1A.2885s0020 Salix purpurea SapurV1A.2885s0020 I 0.675
F775_02803 Aegilops tauschii F775_02803 I 0.674
MLOC_65555 Hordeum vulgare MLOC_65555 I 0.674
Traes_3AS_5E49D47AF Triticum aestivum Traes_3AS_5E49D47AF I 0.674
TRAES3BF034000040CFD_g Triticum aestivum TRAES3BF034000040CFD_g I 0.674
TRIUR3_09345 Triticum urartu TRIUR3_09345 I 0.674
Bostr.26959s0063 Boechera stricta Bostr.26959s0063 I 0.674
chr4.CM0042.760.nc Lotus japonicus chr4.CM0042.760.nc I 0.674
BGIOSGA026430 Oryza indica BGIOSGA026430 I 0.673
BRADI4G04627 Brachypodium distachyon BRADI4G04627 I 0.673
OB07G32480 Oryza brachyantha OB07G32480 I 0.673
OBART07G26990 Oryza barthii OBART07G26990 I 0.673
OGLUM07G26960 Oryza glumaepatula OGLUM07G26960 I 0.673
OMERI07G23590 Oryza meridionalis OMERI07G23590 I 0.673
ONIVA07G26740 Oryza nivara ONIVA07G26740 I 0.673
OPUNC07G25360 Oryza punctata OPUNC07G25360 I 0.673
ORGLA07G0213800 Oryza glaberrima ORGLA07G0213800 I 0.673
ORUFI07G27930 Oryza rufipogon ORUFI07G27930 I 0.673
OS07G0688200 Oryza sativa OS07G0688200 I 0.673
Si022474m.g Setaria italica Si022474m.g I 0.673
MDP0000167107 Malus domestica MDP0000167107 I 0.673
Pavir.Ca00769 Panicum virgatum Pavir.Ca00769 I 0.673
Pavir.J03771 Panicum virgatum Pavir.J03771 I 0.673
Cla013880 Citrullus lanatus Cla013880 I 0.672
Cla018782 Citrullus lanatus Cla018782 I 0.672
Ciclev10015986m.g Citrus clementina Ciclev10015986m.g I 0.672
orange1.1g021188m.g Citrus sinensis orange1.1g021188m.g I 0.672
GLYMA05G35050 Glycine max GLYMA05G35050 I 0.671
MLOC_68593 Hordeum vulgare MLOC_68593 I 0.671
Traes_1AL_91299CB97 Triticum aestivum Traes_1AL_91299CB97 I 0.671
cassava39393.m1 Manihot esculenta cassava39393.m1 I 0.671
Pm008425 Prunus mume Pm008425 I 0.670
Carubv10010865m.g Capsella rubella Carubv10010865m.g I 0.670
PRUPE_ppa015973mg Prunus persica PRUPE_ppa015973mg I 0.669
Cla015409 Citrullus lanatus Cla015409 I 0.669
Pm012912 Prunus mume Pm012912 I 0.669
OB05G12230 Oryza brachyantha OB05G12230 I 0.667
Si030584m.g Setaria italica Si030584m.g I 0.667
Pavir.Bb03718 Panicum virgatum Pavir.Bb03718 I 0.667
GLYMA10G01330 Glycine max GLYMA10G01330 I 0.666
GRMZM2G131442 Zea mays GRMZM2G131442 I 0.666
MTR_1g086510 Medicago truncatula MTR_1g086510 I 0.666
Sb05g026820 Sorghum bicolor Sb05g026820 I 0.666
Si026574m.g Setaria italica Si026574m.g I 0.666
TCM_012363 Theobroma cacao TCM_012363 I 0.666
Ca_03536 Cicer arietinum Ca_03536 I 0.666
Gorai.006G060300 Gossypium raimondii Gorai.006G060300 I 0.666
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.666
PK28164.1 Cannabis sativa PK28164.1 I 0.666
GLYMA17G04171 Glycine max GLYMA17G04171 I 0.665
Ca_08069 Cicer arietinum Ca_08069 I 0.665
Bostr.15774s0093 Boechera stricta Bostr.15774s0093 I 0.665
Cagra.3474s0016 Capsella grandiflora Cagra.3474s0016 I 0.665
Carubv10026871m.g Capsella rubella Carubv10026871m.g I 0.665
GRMZM2G001824 Zea mays GRMZM2G001824 I 0.664
GRMZM2G425427 Zea mays GRMZM2G425427 I 0.664
GSMUA_Achr3G08370_001 Musa acuminata GSMUA_Achr3G08370_001 I 0.664
GSMUA_Achr9G16640_001 Musa acuminata GSMUA_Achr9G16640_001 I 0.664
GSMUA_AchrUn_randomG27010_001 Musa acuminata GSMUA_AchrUn_randomG27010_001 I 0.664
Sb09g002675 Sorghum bicolor Sb09g002675 I 0.664
Sb09g002680 Sorghum bicolor Sb09g002680 I 0.664
cassava28986.valid.m1 Manihot esculenta cassava28986.valid.m1 I 0.663
Lus10009996.g Linum usitatissimum Lus10009996.g I 0.663
Pavir.Ca00957 Panicum virgatum Pavir.Ca00957 I 0.663
Eucgr.H04082 Eucalyptus grandis Eucgr.H04082 I 0.661