Pavir.Ia04415 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia04415 T289268_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.670 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04415.1.p Myb 15 62
Pavir.Ia04415.1.p Myb 68 113

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA011479 Oryza indica BGIOSGA011479 I 0.909
GRMZM2G054111 Zea mays GRMZM2G054111 I 0.909
OB03G13340 Oryza brachyantha OB03G13340 I 0.909
ORGLA03G0030900 Oryza glaberrima ORGLA03G0030900 I 0.909
ORUFI03G03040 Oryza rufipogon ORUFI03G03040 I 0.909
OS03G0142600 Oryza sativa OS03G0142600 I 0.909
Sb01g047450 Sorghum bicolor Sb01g047450 I 0.909
Si037281m.g Setaria italica Si037281m.g I 0.909
Pavir.Ib00221 Panicum virgatum Pavir.Ib00221 I 0.905
MLOC_9927 Hordeum vulgare MLOC_9927 I 0.900
F775_32337 Aegilops tauschii F775_32337 N 0.892
Traes_4DL_14C563681 Triticum aestivum Traes_4DL_14C563681 N 0.892
GRMZM2G089686 Zea mays GRMZM2G089686 I 0.861
GRMZM2G043792 Zea mays GRMZM2G043792 I 0.825
GRMZM2G027697 Zea mays GRMZM2G027697 I 0.795
MLOC_6786 Hordeum vulgare MLOC_6786 I 0.795
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I 0.795
Sb04g026210 Sorghum bicolor Sb04g026210 I 0.795
Si018007m.g Setaria italica Si018007m.g I 0.795
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I 0.795
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I 0.795
Pavir.J37992 Panicum virgatum Pavir.J37992 I 0.795
BGIOSGA006030 Oryza indica BGIOSGA006030 I 0.786
OB02G31640 Oryza brachyantha OB02G31640 I 0.786
OBART02G24300 Oryza barthii OBART02G24300 I 0.786
OMERI02G23750 Oryza meridionalis OMERI02G23750 I 0.786
ONIVA09G12460 Oryza nivara ONIVA09G12460 I 0.786
OPUNC02G22200 Oryza punctata OPUNC02G22200 I 0.786
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I 0.786
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I 0.786
OS02G0618400 Oryza sativa OS02G0618400 I 0.786
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.760
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.760
F775_23572 Aegilops tauschii F775_23572 I 0.751
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.751
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.751
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I 0.745
Bo7g033260 Brassica oleracea Bo7g033260 I 0.738
Bra015029 Brassica rapa Bra015029 I 0.738
MYB305 Arabidopsis thaliana AT3G24310 I 0.733
Bo1g098860 Brassica oleracea Bo1g098860 I 0.733
Bra001941 Brassica rapa Bra001941 I 0.733
Bra028369 Brassica rapa Bra028369 I 0.733
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.733
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.733
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.733
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.733
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.733
Cla007745 Citrullus lanatus Cla007745 I 0.730
Cucsa.383230 Cucumis sativus Cucsa.383230 I 0.730
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.730
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.730
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.729
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.727
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I 0.725
BGIOSGA014750 Oryza indica BGIOSGA014750 I 0.724
Bo3g083130 Brassica oleracea Bo3g083130 I 0.724
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.724
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.724
LPERR04G14700 Leersia perrieri LPERR04G14700 I 0.724
OB04G25360 Oryza brachyantha OB04G25360 I 0.724
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I 0.724
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I 0.724
OS04G0508500 Oryza sativa OS04G0508500 I 0.724
TCM_021037 Theobroma cacao TCM_021037 I 0.724
Cla021798 Citrullus lanatus Cla021798 I 0.724
cassava24389.valid.m1 Manihot esculenta cassava24389.valid.m1 I 0.724
Cucsa.255900 Cucumis sativus Cucsa.255900 I 0.724
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.724
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.724
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I 0.724
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.724
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.723
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.723
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.721
PRUPE_ppa017942mg Prunus persica PRUPE_ppa017942mg I 0.721
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.721
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.721
MDP0000133412 Malus domestica MDP0000133412 I 0.721
MDP0000183451 Malus domestica MDP0000183451 I 0.721
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.719
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.719
BGIOSGA004072 Oryza indica BGIOSGA004072 I 0.718
OB01G33330 Oryza brachyantha OB01G33330 I 0.718
OBART01G24030 Oryza barthii OBART01G24030 I 0.718
OGLUM01G27780 Oryza glumaepatula OGLUM01G27780 I 0.718
OMERI01G22060 Oryza meridionalis OMERI01G22060 I 0.718
ONIVA01G27030 Oryza nivara ONIVA01G27030 I 0.718
OPUNC01G24010 Oryza punctata OPUNC01G24010 I 0.718
ORGLA01G0193500 Oryza glaberrima ORGLA01G0193500 I 0.718
ORUFI01G26910 Oryza rufipogon ORUFI01G26910 I 0.718
OS01G0637800 Oryza sativa OS01G0637800 I 0.718
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.718
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.718
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.718
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.716
Si010822m.g Setaria italica Si010822m.g I 0.715
Pm009050 Prunus mume Pm009050 I 0.715
mgf004640m Mimulus guttatus mgf004640m I 0.715
F775_06959 Aegilops tauschii F775_06959 I 0.714
Traes_2AL_605C25CDF Triticum aestivum Traes_2AL_605C25CDF I 0.714
TRIUR3_18020 Triticum urartu TRIUR3_18020 I 0.714
Ca_20437 Cicer arietinum Ca_20437 I 0.712
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.712
Si003965m.g Setaria italica Si003965m.g I 0.710
GLYMA20G20980 Glycine max GLYMA20G20980 I 0.707
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.707
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.703
BRADI2G44770 Brachypodium distachyon BRADI2G44770 I 0.700
MLOC_5568 Hordeum vulgare MLOC_5568 I 0.700
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I 0.698
GLYMA04G26650 Glycine max GLYMA04G26650 I 0.697
GLYMA06G38340 Glycine max GLYMA06G38340 I 0.697
GRMZM2G143328 Zea mays GRMZM2G143328 I 0.697
Sb03g029050 Sorghum bicolor Sb03g029050 I 0.697
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.697
mgf002201m Mimulus guttatus mgf002201m I 0.696
chr1.CM0163.50.nc Lotus japonicus chr1.CM0163.50.nc I 0.696
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.695
GLYMA10G33450 Glycine max GLYMA10G33450 I 0.694
GLYMA20G34140 Glycine max GLYMA20G34140 I 0.694
TRAES3BF026200120CFD_g Triticum aestivum TRAES3BF026200120CFD_g I 0.693
Ca_07872 Cicer arietinum Ca_07872 I 0.693
Lus10014453.g Linum usitatissimum Lus10014453.g I 0.693
SapurV1A.0021s0310 Salix purpurea SapurV1A.0021s0310 I 0.686
BRADI2G38560 Brachypodium distachyon BRADI2G38560 I 0.685
GSMUA_Achr11G02410_001 Musa acuminata GSMUA_Achr11G02410_001 I 0.685
Ciclev10015986m.g Citrus clementina Ciclev10015986m.g I 0.685
orange1.1g021188m.g Citrus sinensis orange1.1g021188m.g I 0.685
Pavir.J35999 Panicum virgatum Pavir.J35999 I 0.685
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.683
Cucsa.238540 Cucumis sativus Cucsa.238540 I 0.683
Gorai.006G060300 Gossypium raimondii Gorai.006G060300 I 0.682
GLYMA15G14190 Glycine max GLYMA15G14190 I 0.680
GSMUA_Achr11G17190_001 Musa acuminata GSMUA_Achr11G17190_001 I 0.680
Aquca_002_00902 Aquilegia coerulea Aquca_002_00902 I 0.678
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.678
Gorai.004G146000 Gossypium raimondii Gorai.004G146000 I 0.677
Bo2g057760 Brassica oleracea Bo2g057760 I 0.676
Bra033948 Brassica rapa Bra033948 I 0.676
TCM_018971 Theobroma cacao TCM_018971 I 0.676
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.675
LPERR01G20550 Leersia perrieri LPERR01G20550 I 0.674
Bra020744 Brassica rapa Bra020744 I 0.673
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.673
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I 0.673
Cla016762 Citrullus lanatus Cla016762 I 0.672
Pavir.Eb01664 Panicum virgatum Pavir.Eb01664 N 0.672
MTR_1g073170 Medicago truncatula MTR_1g073170 I 0.671
Pm015392 Prunus mume Pm015392 I 0.671
ATMYB121 Arabidopsis thaliana AT3G30210 D 0.670
Bo7g088650 Brassica oleracea Bo7g088650 I 0.670
Bo9g009020 Brassica oleracea Bo9g009020 I 0.670
Bra025410 Brassica rapa Bra025410 I 0.670
ATMYB121 Arabidopsis lyrata fgenesh2_kg.5__710__AT3G30210.1 I 0.670
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.670
Bostr.0556s0619 Boechera stricta Bostr.0556s0619 I 0.670
Cagra.1138s0003 Capsella grandiflora Cagra.1138s0003 I 0.670
Carubv10018530m.g Capsella rubella Carubv10018530m.g I 0.670
Gorai.001G090100 Gossypium raimondii Gorai.001G090100 I 0.670
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.668
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.668
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.667
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.667
GLYMA18G50881 Glycine max GLYMA18G50881 I 0.666
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.666
Cla017610 Citrullus lanatus Cla017610 I 0.665
GSMUA_Achr3G12730_001 Musa acuminata GSMUA_Achr3G12730_001 I 0.664
TRIUR3_25064 Triticum urartu TRIUR3_25064 I 0.663
Si002446m.g Setaria italica Si002446m.g I 0.662
Lus10034372.g Linum usitatissimum Lus10034372.g I 0.662
Pavir.Ea00964 Panicum virgatum Pavir.Ea00964 I 0.662