Pavir.J35999 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J35999 T289465_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.661 0.728
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J35999.1.p Myb 13 60
Pavir.J35999.1.p Myb 66 110

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb01664 Panicum virgatum Pavir.Eb01664 N 0.835
Si003965m.g Setaria italica Si003965m.g I 0.829
Pavir.J05460 Panicum virgatum Pavir.J05460 I 0.818
Si003841m.g Setaria italica Si003841m.g I 0.810
Pavir.Eb01665 Panicum virgatum Pavir.Eb01665 N 0.806
BRADI2G44770 Brachypodium distachyon BRADI2G44770 I 0.782
BGIOSGA004072 Oryza indica BGIOSGA004072 I 0.781
OB01G33330 Oryza brachyantha OB01G33330 I 0.781
OBART01G24030 Oryza barthii OBART01G24030 I 0.781
OGLUM01G27780 Oryza glumaepatula OGLUM01G27780 I 0.781
OMERI01G22060 Oryza meridionalis OMERI01G22060 I 0.781
ONIVA01G27030 Oryza nivara ONIVA01G27030 I 0.781
OPUNC01G24010 Oryza punctata OPUNC01G24010 I 0.781
ORGLA01G0193500 Oryza glaberrima ORGLA01G0193500 I 0.781
ORUFI01G26910 Oryza rufipogon ORUFI01G26910 I 0.781
OS01G0637800 Oryza sativa OS01G0637800 I 0.781
MLOC_5568 Hordeum vulgare MLOC_5568 I 0.772
GRMZM2G143328 Zea mays GRMZM2G143328 I 0.769
TRAES3BF026200120CFD_g Triticum aestivum TRAES3BF026200120CFD_g I 0.765
Sb03g029050 Sorghum bicolor Sb03g029050 I 0.761
TRIUR3_25064 Triticum urartu TRIUR3_25064 I 0.746
LPERR01G20550 Leersia perrieri LPERR01G20550 I 0.738
F775_02242 Aegilops tauschii F775_02242 I 0.735
Traes_3DL_429583AEC Triticum aestivum Traes_3DL_429583AEC I 0.735
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.694
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.686
BGIOSGA011479 Oryza indica BGIOSGA011479 I 0.685
GRMZM2G054111 Zea mays GRMZM2G054111 I 0.685
MLOC_9927 Hordeum vulgare MLOC_9927 I 0.685
OB03G13340 Oryza brachyantha OB03G13340 I 0.685
ORGLA03G0030900 Oryza glaberrima ORGLA03G0030900 I 0.685
ORUFI03G03040 Oryza rufipogon ORUFI03G03040 I 0.685
OS03G0142600 Oryza sativa OS03G0142600 I 0.685
Sb01g047450 Sorghum bicolor Sb01g047450 I 0.685
Si037281m.g Setaria italica Si037281m.g I 0.685
Pavir.Ia04415 Panicum virgatum Pavir.Ia04415 I 0.685
Pavir.Ib00221 Panicum virgatum Pavir.Ib00221 I 0.685
GSMUA_Achr3G12730_001 Musa acuminata GSMUA_Achr3G12730_001 I 0.684
MLOC_68593 Hordeum vulgare MLOC_68593 I 0.682
POPTR_0001s35200 Populus trichocarpa POPTR_0001s35200 I 0.682
Traes_1AL_91299CB97 Triticum aestivum Traes_1AL_91299CB97 I 0.682
evm.TU.supercontig_49.71 Carica papaya evm.TU.supercontig_49.71 I 0.678
Bra033948 Brassica rapa Bra033948 I 0.676
Bo2g057760 Brassica oleracea Bo2g057760 I 0.675
Ciclev10015986m.g Citrus clementina Ciclev10015986m.g I 0.675
orange1.1g021188m.g Citrus sinensis orange1.1g021188m.g I 0.675
PK16958.1 Cannabis sativa PK16958.1 I 0.673
GSMUA_Achr9G07000_001 Musa acuminata GSMUA_Achr9G07000_001 I 0.670
F775_32337 Aegilops tauschii F775_32337 N 0.668
GSMUA_Achr11G20830_001 Musa acuminata GSMUA_Achr11G20830_001 I 0.668
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I 0.668
Si024431m.g Setaria italica Si024431m.g N 0.668
Traes_4DL_14C563681 Triticum aestivum Traes_4DL_14C563681 N 0.668
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.668
Pavir.Ca00957 Panicum virgatum Pavir.Ca00957 I 0.668
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.666
GSMUA_Achr6G04130_001 Musa acuminata GSMUA_Achr6G04130_001 I 0.666
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.665
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.665
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.665
TCM_016901 Theobroma cacao TCM_016901 I 0.665
Pm015692 Prunus mume Pm015692 I 0.665
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.665
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.665
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.665
GSMUA_Achr8G29910_001 Musa acuminata GSMUA_Achr8G29910_001 I 0.664
POPTR_0008s12130 Populus trichocarpa POPTR_0008s12130 I 0.664
Solyc02g067760.2 Solanum lycopersicum Solyc02g067760.2 I 0.664
gene03712-v1.0-hybrid Fragaria vesca gene03712-v1.0-hybrid I 0.664
MDP0000934638 Malus domestica MDP0000934638 I 0.664
SapurV1A.0079s0020 Salix purpurea SapurV1A.0079s0020 I 0.664
BGIOSGA020382 Oryza indica BGIOSGA020382 I 0.663
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.663
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.663
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.663
MYB24 Arabidopsis thaliana AT5G40350 D 0.661