CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.10064s0010
(
Boechera stricta
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Bostr.10064s0010
T297240_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.906
0.596
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.886
0.658
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.886
0.658
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.10064s0010.1.p
NAC/NAM
1
131
MVIFSPTEEELVNHYLKNKNLGNTWLVDEAISEINFLSYNPEFLPCLAKIQSDDLKWYFFSRLEYTNAKKHAIKRSTGSGFWMPTGKDRIIRGKDGVEIGLKKTLVYHERKAFNGFLNGIRTDWVMHEYRI
Links
Other
NAC/NAM
family TFs
Other
Boechera stricta
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.971
Bostr.4825s0021
Boechera stricta
Bostr.4825s0021
I
0.970
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.967
Bostr.4825s0024
Boechera stricta
Bostr.4825s0024
N
0.961
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.933
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.931
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.917
Bra027596
Brassica rapa
Bra027596
I
0.911
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.910
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.910
Bra008553
Brassica rapa
Bra008553
I
0.908
Bra036328
Brassica rapa
Bra036328
I
0.907
Bra036327
Brassica rapa
Bra036327
I
0.906
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.906
NAC69
Arabidopsis thaliana
AT4G01550
D
0.906
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.905
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.905
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.902
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.901
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.898
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.895
Bostr.5325s0011
Boechera stricta
Bostr.5325s0011
I
0.894
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.890
anac067
Arabidopsis thaliana
AT4G01520
I
0.886
NAC68
Arabidopsis thaliana
AT4G01540
D
0.886
GSMUA_Achr11G07800_001
Musa acuminata
GSMUA_Achr11G07800_001
N
0.881
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.880
Bra036326
Brassica rapa
Bra036326
I
0.878
MDP0000575835
Malus domestica
MDP0000575835
I
0.878
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.876
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.875
Bo5g002830
Brassica oleracea
Bo5g002830
N
0.874
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.872