Cagra.12529s0001 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.12529s0001 T297383_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC69
M07216_2.00 		Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW		 Dap-seq
OMalley et al.(2016)
NTM2_col_b 		0.938 0.704
NAC68
M07214_2.00 		Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY		 Dap-seq
OMalley et al.(2016)
NTM1_col_a 		0.883 0.704
NAC68
M07215_2.00 		Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD		 Dap-seq
OMalley et al.(2016)
NTM1_colamp_a 		0.883 0.704
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12529s0001.1.p NAC/NAM 5 133
Cagra.12529s0001.2.p NAC/NAM 5 133

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10000489m.g Capsella rubella Carubv10000489m.g I 0.991
Bostr.10064s0010 Boechera stricta Bostr.10064s0010 I 0.967
Bostr.4825s0021 Boechera stricta Bostr.4825s0021 I 0.949
Carubv10003260m.g Capsella rubella Carubv10003260m.g I 0.946
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I 0.945
Bo00853s060 Brassica oleracea Bo00853s060 I 0.942
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I 0.938
NAC69 Arabidopsis thaliana AT4G01550 D 0.938
Bo9g004090 Brassica oleracea Bo9g004090 I 0.935
Bo6g119080 Brassica oleracea Bo6g119080 I 0.935
Bra036327 Brassica rapa Bra036327 I 0.933
Thhalv10028684m.g Eutrema salsugineum Thhalv10028684m.g I 0.924
Bra008553 Brassica rapa Bra008553 I 0.923
Bostr.4825s0024 Boechera stricta Bostr.4825s0024 N 0.912
Bo9g004070 Brassica oleracea Bo9g004070 I 0.905
Bo9g004100 Brassica oleracea Bo9g004100 I 0.904
Bra036328 Brassica rapa Bra036328 I 0.899
Bo9g004110 Brassica oleracea Bo9g004110 I 0.895
Bo9g061230 Brassica oleracea Bo9g061230 I 0.893
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I 0.891
Bra027596 Brassica rapa Bra027596 I 0.885
NAC68 Arabidopsis thaliana AT4G01540 D 0.883
fgenesh1_pg.C_scaffold_3000386 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000386 I 0.879
Bra036326 Brassica rapa Bra036326 I 0.877
anac067 Arabidopsis thaliana AT4G01520 I 0.872
Pavir.Fb00405 Panicum virgatum Pavir.Fb00405 I 0.871