Carubv10000489m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10000489m.g T297449_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC69
M07216_2.00 		Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW		 Dap-seq
OMalley et al.(2016)
NTM2_col_b 		0.961 0.722
NAC68
M07214_2.00 		Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY		 Dap-seq
OMalley et al.(2016)
NTM1_col_a 		0.926 0.713
NAC68
M07215_2.00 		Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD		 Dap-seq
OMalley et al.(2016)
NTM1_colamp_a 		0.926 0.713
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000489m NAC/NAM 67 195
Carubv10000500m NAC/NAM 67 195

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.12529s0001 Capsella grandiflora Cagra.12529s0001 I 0.991
Bostr.10064s0010 Boechera stricta Bostr.10064s0010 I 0.971
Bostr.4825s0021 Boechera stricta Bostr.4825s0021 I 0.969
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I 0.966
Carubv10003260m.g Capsella rubella Carubv10003260m.g I 0.966
Bo00853s060 Brassica oleracea Bo00853s060 I 0.964
NAC69 Arabidopsis thaliana AT4G01550 D 0.961
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I 0.961
Bo6g119080 Brassica oleracea Bo6g119080 I 0.958
Bo9g004090 Brassica oleracea Bo9g004090 I 0.958
Bra036327 Brassica rapa Bra036327 I 0.956
Thhalv10028684m.g Eutrema salsugineum Thhalv10028684m.g I 0.953
Bra008553 Brassica rapa Bra008553 I 0.952
Bo9g004100 Brassica oleracea Bo9g004100 I 0.936
Bo9g004070 Brassica oleracea Bo9g004070 I 0.929
NAC68 Arabidopsis thaliana AT4G01540 D 0.926
Bra027596 Brassica rapa Bra027596 I 0.925
Bra036328 Brassica rapa Bra036328 I 0.925
Bo9g004110 Brassica oleracea Bo9g004110 I 0.922
Bo9g061230 Brassica oleracea Bo9g061230 I 0.920
anac067 Arabidopsis thaliana AT4G01520 I 0.919
Bostr.4825s0024 Boechera stricta Bostr.4825s0024 N 0.918
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I 0.915
MDP0000575835 Malus domestica MDP0000575835 I 0.909
Bra036326 Brassica rapa Bra036326 I 0.907
fgenesh1_pg.C_scaffold_3000386 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000386 I 0.904
Pavir.Fb00405 Panicum virgatum Pavir.Fb00405 I 0.896
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I 0.895
POPTR_0014s10330 Populus trichocarpa POPTR_0014s10330 I 0.893
BRADI3G16480 Brachypodium distachyon BRADI3G16480 I 0.892
LPERR08G03510 Leersia perrieri LPERR08G03510 I 0.892
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I 0.892
Bostr.5325s0009 Boechera stricta Bostr.5325s0009 I 0.892
OB08G13730 Oryza brachyantha OB08G13730 I 0.891
OBART08G03460 Oryza barthii OBART08G03460 I 0.891
OGLUM08G03540 Oryza glumaepatula OGLUM08G03540 I 0.891
OLONG_000105 Oryza longistaminata OLONG_000105 I 0.891
OMERI08G03500 Oryza meridionalis OMERI08G03500 I 0.891
OPUNC08G03310 Oryza punctata OPUNC08G03310 I 0.891
ORGLA08G0029000 Oryza glaberrima ORGLA08G0029000 I 0.891
Si013369m.g Setaria italica Si013369m.g I 0.891
Pavir.Fa01901 Panicum virgatum Pavir.Fa01901 I 0.890
MDP0000214515 Malus domestica MDP0000214515 I 0.889
GSMUA_AchrUn_randomG04060_001 Musa acuminata GSMUA_AchrUn_randomG04060_001 I 0.888
F775_30082 Aegilops tauschii F775_30082 I 0.885
MLOC_50406 Hordeum vulgare MLOC_50406 I 0.885
Traes_7AL_669D4AE47 Triticum aestivum Traes_7AL_669D4AE47 I 0.885
Traes_7BL_0C386426A Triticum aestivum Traes_7BL_0C386426A I 0.885
Traes_7DL_AB67A0B36 Triticum aestivum Traes_7DL_AB67A0B36 I 0.885
TRIUR3_32613 Triticum urartu TRIUR3_32613 I 0.885
GSMUA_Achr11G07800_001 Musa acuminata GSMUA_Achr11G07800_001 N 0.883
GSMUA_Achr3G00330_001 Musa acuminata GSMUA_Achr3G00330_001 I 0.882
POPTR_0014s10350 Populus trichocarpa POPTR_0014s10350 I 0.882
POPTR_0014s10360 Populus trichocarpa POPTR_0014s10360 I 0.882
BGIOSGA027623 Oryza indica BGIOSGA027623 I 0.879
ONIVA08G03440 Oryza nivara ONIVA08G03440 I 0.879
ORUFI08G03870 Oryza rufipogon ORUFI08G03870 I 0.879
OS08G0157900 Oryza sativa OS08G0157900 I 0.879
POPTR_0014s07210 Populus trichocarpa POPTR_0014s07210 I 0.879
mgf015836m Mimulus guttatus mgf015836m I 0.877
Sb07g003900 Sorghum bicolor Sb07g003900 I 0.873
SapurV1A.0321s0350 Salix purpurea SapurV1A.0321s0350 I 0.871