CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-208
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00011099
T306284_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.916
0.629
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.916
0.629
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
R07B7.15
Nuclear receptor
41
112
SKCEICGNPAIGYHYDIASCNGCKAFFRRTVITGRQVACKKWGTCLEEEIPINRRICPGCRFSKCVKVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nhr-206
Caenorhabditis elegans
WBGene00011097
I
0.984
CBG23380
Caenorhabditis briggsae
CBG23380
D
0.916
CBG23381
Caenorhabditis briggsae
CBG23381
I
0.916
CBN28497
Caenorhabditis brenneri
CBN28497
I
0.916
CRE27050
Caenorhabditis remanei
CRE27050
I
0.916
nhr-154
Caenorhabditis elegans
WBGene00007547
D
0.916
nhr-153
Caenorhabditis elegans
WBGene00007546
I
0.913
CJA03696
Caenorhabditis japonica
CJA03696
I
0.912
CBN28791
Caenorhabditis brenneri
CBN28791
I
0.909
CRE27052
Caenorhabditis remanei
CRE27052
I
0.906
nhr-207
Caenorhabditis elegans
WBGene00011098
I
0.856
CRE27051
Caenorhabditis remanei
CRE27051
I
0.844