Ppa-vab-3 (Pristionchus pacificus)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 PPA03442 T312033_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.720 0.720
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.720 0.720
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.720 0.720
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.720 0.720
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.720 0.720
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.720 0.720
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.720 0.720
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.720 0.720
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.720 0.720
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.720 0.720
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.720 0.720
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.720 0.720
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.720 0.720
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.720 0.720
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.720 0.720
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.720 0.720
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.704 0.704
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.704 0.704
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.704 0.704
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.704 0.704
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA03442 Paired box 18 142

Links

Other Paired box family TFs
Other Pristionchus pacificus TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold478-EXSNAP2012.12 Pristionchus exspectatus scaffold478-EXSNAP2012.12 I 1.000
L889_g29910 Steinernema feltiae L889_g29910 I 0.880
CBG04481 Caenorhabditis briggsae CBG04481 I 0.880
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.872
NECAME_04524 Necator americanus NECAME_04524 I 0.872
L893_g1041 Steinernema glaseri L893_g1041 I 0.872
TELCIR_00311 Teladorsagia circumcincta TELCIR_00311 I 0.872
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.856
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.856
Bm14693 Brugia malayi Bm14693 I 0.856
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.856
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.856
ALUE_0000749601 Ascaris lumbricoides ALUE_0000749601 N 0.816
Ocbimv22011111m.g Octopus bimaculoides Ocbimv22011111m.g I 0.816
TCLT_0000192601 Thelazia callipaeda TCLT_0000192601 N 0.816
EVEC_0000795701 Enterobius vermicularis EVEC_0000795701 I 0.808
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.808
WUBG_13045 Wuchereria bancrofti WUBG_13045 I 0.800
nRc.2.0.1.g00894 Romanomermis culicivorax nRc.2.0.1.g00894 I 0.800
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.795
snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 N 0.795
pax6a Danio rerio ENSDARG00000103379 I 0.793
EEL_0000889701 Elaeophora elaphi EEL_0000889701 N 0.792
OFLC_0001383501 Onchocerca flexuosa OFLC_0001383501 I 0.792
PEQ_0001140301 Parascaris equorum PEQ_0001140301 N 0.792
A_03128 Schistosoma haematobium A_03128 I 0.792
Sjc_0004220 Schistosoma japonicum Sjc_0004220 I 0.784
LOAG_04187 Loa loa LOAG_04187 N 0.784
BTMF_0000869901 Brugia timori BTMF_0000869901 N 0.784
PHUM217120 Pediculus humanus PHUM217120 I 0.784
Pax6 Mus musculus ENSMUSG00000027168 D 0.784
ASU_08112 Ascaris suum ASU_08112 N 0.784
DILT_0000442801 Diphyllobothrium latum DILT_0000442801 I 0.784
nLs.2.1.2.g01338 Litomosoides sigmodontis nLs.2.1.2.g01338 N 0.784
DME_0000186001 Dracunculus medinensis DME_0000186001 N 0.784
AMAM010937 Anopheles maculatus AMAM010937 I 0.776
nRc.2.0.1.g30341 Romanomermis culicivorax nRc.2.0.1.g30341 I 0.776
RPRC003362 Rhodnius prolixus RPRC003362 I 0.760
ECPE_0001376401 Echinostoma caproni ECPE_0001376401 I 0.758
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.752
BGIBMGA009545 Bombyx mori BGIBMGA009545 I 0.746
TTAC_0000709401 Hydatigera taeniaeformis TTAC_0000709401 I 0.744
DAPPUDRAFT_122807 Daphnia pulex DAPPUDRAFT_122807 I 0.744
pax6b Danio rerio ENSDARG00000045936 I 0.744
TASK_0000210301 Taenia asiatica TASK_0000210301 I 0.744
KGM_02181 Danaus plexippus KGM_02181 I 0.744
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.744
TRE_0000921601 Trichobilharzia regenti TRE_0000921601 I 0.744
HmN_000735200 Hymenolepis microstoma HmN_000735200 N 0.736
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.736
D915_05709 Fasciola hepatica D915_05709 I 0.736
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.736
EmuJ_000389800 Echinococcus multilocularis EmuJ_000389800 I 0.736
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.736
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.736
BGIBMGA009432 Bombyx mori BGIBMGA009432 I 0.736
CLEC008846 Cimex lectularius CLEC008846 I 0.736
TsM_000804100 Taenia solium TsM_000804100 I 0.736
HMEL009702 Heliconius melpomene HMEL009702 I 0.736
ACEP24464 Atta cephalotes ACEP24464 I 0.736
RPRC001429 Rhodnius prolixus RPRC001429 I 0.736
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.728
YQE_05107 Dendroctonus ponderosae YQE_05107 I 0.728
ECPE_0000273501 Echinostoma caproni ECPE_0000273501 I 0.728
SPU_006786 Strongylocentrotus purpuratus SPU_006786 I 0.728
ACOM023323 Anopheles coluzzii ACOM023323 I 0.728
CLEC008733 Cimex lectularius CLEC008733 I 0.726
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.720
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.720
LDEC008984 Leptinotarsa decemlineata LDEC008984 I 0.720
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.720
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.720
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.720
Aan_R002178 Calypte anna Aan_R002178 I 0.720
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.720
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.720
SINV17241 Solenopsis invicta SINV17241 I 0.720
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.720
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.720
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.720
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.720
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.720
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.720
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.720
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.720
PAX5 Microcebus murinus ENSMICG00000017679 I 0.720
nRc.2.0.1.g01878 Romanomermis culicivorax nRc.2.0.1.g01878 I 0.720
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.720
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.720
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.720
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.720
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.720
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.720
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.720
PAX5 Equus caballus ENSECAG00000000551 I 0.720
PAX5 Echinops telfairi ENSETEG00000002360 I 0.720
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.720
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.720
PAX5 Felis catus ENSFCAG00000001628 I 0.720
Pax5B Gallus gallus ENSGALG00000016431 D 0.720
PAX5 Homo sapiens ENSG00000196092 D 0.720
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.720
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.720
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.720
ACEP20912 Atta cephalotes ACEP20912 N 0.720
AATE019182 Anopheles atroparvus AATE019182 I 0.720
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.720
PAX5 Procavia capensis ENSPCAG00000004660 I 0.720
XP_002935920 Xenopus tropicalis XP_002935920 I 0.720
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.720
PAX5 Bos taurus ENSBTAG00000012498 I 0.720
Pax5 Mus musculus ENSMUSG00000014030 D 0.720
PAX5 Canis familiaris ENSCAFG00000002357 I 0.720
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.720
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.720
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.720
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.720
ALUE_0001419501 Ascaris lumbricoides ALUE_0001419501 I 0.712
Bm1956 Brugia malayi Bm1956 I 0.712
pax5 Danio rerio ENSDARG00000037383 I 0.712
Alligator_sinensis_CCG012866.1 Alligator sinensis Alligator_sinensis_CCG012866.1 I 0.712
pax2a Danio rerio ENSDARG00000028148 I 0.712
TCNE_0000738401 Toxocara canis TCNE_0000738401 I 0.712
PAX5 Dasypus novemcinctus ENSDNOG00000035956 I 0.712
ASU_03705 Ascaris suum ASU_03705 I 0.712
nDi.2.2.2.g01404 Dirofilaria immitis nDi.2.2.2.g01404 I 0.712
nLs.2.1.2.g05197 Litomosoides sigmodontis nLs.2.1.2.g05197 I 0.712
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.712
ENSSHAG00000012375 Sarcophilus harrisii ENSSHAG00000012375 I 0.712
pax8.L Xenopus laevis XB-GENE-865008 I 0.712
EEL_0001009001 Elaeophora elaphi EEL_0001009001 I 0.712
ENSPSIG00000003215 Pelodiscus sinensis ENSPSIG00000003215 I 0.712
pax5 Takifugu rubripes ENSTRUG00000003227 I 0.712
nOo.2.0.1.g00953 Onchocerca ochengi nOo.2.0.1.g00953 I 0.712
SPU_014539 Strongylocentrotus purpuratus SPU_014539 I 0.712
WBGene00241653 Onchocerca volvulus WBGene00241653 I 0.712
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.712
ENSPFOG00000011719 Poecilia formosa ENSPFOG00000011719 I 0.712
ENSXMAG00000012680 Xiphophorus maculatus ENSXMAG00000012680 I 0.712
LOAG_00159 Loa loa LOAG_00159 I 0.712
SMUV_0000412301 Syphacia muris SMUV_0000412301 I 0.712
nAv.1.0.1.g01083 Acanthocheilonema viteae nAv.1.0.1.g01083 I 0.704
TsM_000110300 Taenia solium TsM_000110300 I 0.704
TCLT_0000790801 Thelazia callipaeda TCLT_0000790801 I 0.704
EmuJ_000447000 Echinococcus multilocularis EmuJ_000447000 I 0.704
ECANG7_01924 Echinococcus canadensis ECANG7_01924 I 0.704
PAX8 Tupaia belangeri ENSTBEG00000008679 I 0.704
ENSGMOG00000012561 Gadus morhua ENSGMOG00000012561 I 0.704
PAX8 Loxodonta africana ENSLAFG00000021590 I 0.704
PAX8 Gorilla gorilla ENSGGOG00000004587 I 0.704
pax5 Gasterosteus aculeatus ENSGACG00000016112 I 0.704
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.704
ENSMEUG00000013983 Macropus eugenii ENSMEUG00000013983 I 0.704
PAX8 Myotis lucifugus ENSMLUG00000011936 I 0.704
Pax8 Mus musculus ENSMUSG00000026976 I 0.704
ENSNLEG00000002157 Nomascus leucogenys ENSNLEG00000002157 I 0.704
ENSMPUG00000009512 Mustela putorius furo ENSMPUG00000009512 I 0.704
PAX8 Monodelphis domestica ENSMODG00000013770 I 0.704
PAX8 Macaca mulatta ENSMMUG00000011578 I 0.704
PAX8 Homo sapiens ENSG00000125618 D 0.704
PAX8 Erinaceus europaeus ENSEEUG00000003041 I 0.704
ENSAMEG00000010662 Ailuropoda melanoleuca ENSAMEG00000010662 I 0.704
PAX8 Bos taurus ENSBTAG00000019354 I 0.704
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.704
CapteG119889 Capitella teleta CapteG119889 I 0.704
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.704
PAX8 Canis familiaris ENSCAFG00000007309 I 0.704
PAX8 Callithrix jacchus ENSCJAG00000013889 I 0.704
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.704
ENSCSAVG00000004294 Ciona savignyi ENSCSAVG00000004294 I 0.704
ENSCSAG00000016682 Chlorocebus sabaeus ENSCSAG00000016682 I 0.704
PAX8 Cavia porcellus ENSCPOG00000012011 I 0.704
PAX8 Ornithorhynchus anatinus ENSOANG00000010554 I 0.704
ENSOARG00000020812 Ovis aries ENSOARG00000020812 I 0.704
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.704
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.704
ENSSTOG00000024664 Ictidomys tridecemlineatus ENSSTOG00000024664 I 0.704
ENSSSCG00000021332 Sus scrofa ENSSSCG00000021332 I 0.704
ENSSHAG00000011845 Sarcophilus harrisii ENSSHAG00000011845 I 0.704
PAX8 Tursiops truncatus ENSTTRG00000011948 I 0.704
LotgiG135549 Lottia gigantea LotgiG135549 I 0.704
Myotis_brandtii_Pax8_10002304 Myotis brandtii Myotis_brandtii_Pax8_10002304 I 0.704
pax8 Xenopus tropicalis XB-GENE-483693 I 0.704
ENSP00000395498 Macaca fascicularis ENSP00000395498 I 0.704
ENSP00000263334-D1 Bos grunniens ENSP00000263334-D1 I 0.704
Alligator_sinensis_CCG013279.1 Alligator sinensis Alligator_sinensis_CCG013279.1 I 0.704
Pax8 Rattus norvegicus ENSRNOG00000026203 D 0.704
PAX8 Pteropus vampyrus ENSPVAG00000005666 I 0.704
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.704
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.704
ENSONIG00000008952 Oreochromis niloticus ENSONIG00000008952 I 0.704
PAX8 Otolemur garnettii ENSOGAG00000009418 I 0.704
PAX8 Oryctolagus cuniculus ENSOCUG00000004187 I 0.704
pax5 Oryzias latipes ENSORLG00000005326 I 0.704
ENSPANG00000016994 Papio anubis ENSPANG00000016994 I 0.704
ENSPPYG00000012184 Pongo abelii ENSPPYG00000012184 I 0.704
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.704
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.704
PAX8 Procavia capensis ENSPCAG00000005498 I 0.704
pax5.L Xenopus laevis XB-GENE-865318 I 0.704