CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HMGB1
(
Ornithorhynchus anatinus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSOANG00000011494
T328557_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000018211
Sox
9
63
PRGKMSSYAFFVQTCREEHKKKHPDSLVNFADFSRKCSERWKLLCAEHRTPCRDC
Links
Other
Sox
family TFs
Other
Ornithorhynchus anatinus
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASTEI08849
Anopheles stephensi
ASTEI08849
N
0.584
HelroG72245
Helobdella robusta
HelroG72245
N
0.512
GPLIN_001135700
Globodera pallida
GPLIN_001135700
N
0.496
SVUK_0000870501
Strongylus vulgaris
SVUK_0000870501
N
0.496
HPBE_0002300401
Heligmosomoides bakeri
HPBE_0002300401
N
0.457
NBR_0000051501
Nippostrongylus brasiliensis
NBR_0000051501
N
0.457
NEUTE1DRAFT_130971
Neurospora tetrasperma
NEUTE1DRAFT_130971
N
0.452
pbrm1l
Danio rerio
ENSDARG00000077038
N
0.444
pbrm1l
Tetraodon nigroviridis
ENSTNIG00000014731
N
0.444
pbrm1l
Takifugu rubripes
ENSTRUG00000005335
N
0.444
OESDEN_22493
Oesophagostomum dentatum
OESDEN_22493
N
0.442
HelroG167607
Helobdella robusta
HelroG167607
N
0.441
SMAR010283
Strigamia maritima
SMAR010283
N
0.435
CH063_08320
Colletotrichum higginsianum
CH063_08320
N
0.431
CSUB01_02862
Colletotrichum sublineola
CSUB01_02862
N
0.431
GLRG_05645
Colletotrichum graminicola
GLRG_05645
N
0.431
ENSOGAG00000011763
Otolemur garnettii
ENSOGAG00000011763
N
0.427
ENSOANG00000000353
Ornithorhynchus anatinus
ENSOANG00000000353
N
0.422
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.420
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.420
TOX2
Sorex araneus
ENSSARG00000001080
N
0.420
ENSTGUG00000014902
Taeniopygia guttata
ENSTGUG00000014902
N
0.420
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.420
Hsal_06265--XP_624018.2_APIME
Harpegnathos saltator
Hsal_06265--XP_624018.2_APIME
N
0.420
SNAPOd2T00002710001
Oikopleura dioica
SNAPOd2T00002710001
I
0.420
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.420
AMAM014030
Anopheles maculatus
AMAM014030
N
0.420
AMIN005634
Anopheles minimus
AMIN005634
N
0.420
ALUE_0000699101
Ascaris lumbricoides
ALUE_0000699101
N
0.420
ASU_00726
Ascaris suum
ASU_00726
N
0.420
D918_03887
Trichuris suis
D918_03887
N
0.420
TCNE_0000652201
Toxocara canis
TCNE_0000652201
N
0.420
PHUM393920
Pediculus humanus
PHUM393920
N
0.419
HPLM_0002008001
Haemonchus placei
HPLM_0002008001
N
0.419
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.419
SBAD_0000070901
Soboliphyme baturini
SBAD_0000070901
I
0.419
TELCIR_19210
Teladorsagia circumcincta
TELCIR_19210
N
0.419
TELCIR_25179
Teladorsagia circumcincta
TELCIR_25179
N
0.419
hmgb2a
Danio rerio
ENSDARG00000029722
N
0.415