orange1.1g014153m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g014153m.g T334630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g014153m Sox 32 93
orange1.1g017228m Sox 3 38
orange1.1g019122m Sox 32 93
orange1.1g020237m Sox 32 93

Links

Other Sox family TFs
Other Citrus sinensis TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g043804m.g Citrus sinensis orange1.1g043804m.g N 0.494
orange1.1g036321m.g Citrus sinensis orange1.1g036321m.g N 0.470
DDB_G0287433 Dictyostelium discoideum DDB_G0287433 N 0.465
GA28914 Drosophila pseudoobscura FBgn0250273 N 0.457
TRAES3BF116200180CFD_g Triticum aestivum TRAES3BF116200180CFD_g N 0.457
GH17483 Drosophila grimshawi FBgn0124953 N 0.449
Minc11458 Meloidogyne incognita Minc11458 N 0.448
TcIL3000.10.440 Trypanosoma congolense TcIL3000.10.440 N 0.431
CBN25334 Caenorhabditis brenneri CBN25334 N 0.427
Hsal_04827--XP_001122993.1_APIME Harpegnathos saltator Hsal_04827--XP_001122993.1_APIME N 0.422
orange1.1g039102m.g Citrus sinensis orange1.1g039102m.g N 0.422
OESDEN_03696 Oesophagostomum dentatum OESDEN_03696 N 0.416