orange1.1g036321m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g036321m.g T334646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g036321m Sox 1 35

Links

Other Sox family TFs
Other Citrus sinensis TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g043804m.g Citrus sinensis orange1.1g043804m.g N 0.552
CBN25334 Caenorhabditis brenneri CBN25334 N 0.529
CBN19486 Caenorhabditis brenneri CBN19486 N 0.477
TcIL3000.10.440 Trypanosoma congolense TcIL3000.10.440 N 0.477
ENSAPLG00000008530 Anas platyrhynchos ENSAPLG00000008530 N 0.474
ENSFALG00000011068 Ficedula albicollis ENSFALG00000011068 N 0.474
ENSGALG00000023601 Gallus gallus ENSGALG00000023601 N 0.474
ENSMGAG00000006336 Meleagris gallopavo ENSMGAG00000006336 N 0.474
ENSPSIG00000016857 Pelodiscus sinensis ENSPSIG00000016857 N 0.474
LbrM.21.1660 Leishmania braziliensis LbrM.21.1660 N 0.474
Aan_R006397 Calypte anna Aan_R006397 N 0.474
Afo_R011382 Aptenodytes forsteri Afo_R011382 N 0.474
Brh_R007868 Buceros rhinoceros Brh_R007868 N 0.474
Gfo_R008143 Geospiza fortis Gfo_R008143 N 0.474
orange1.1g014153m.g Citrus sinensis orange1.1g014153m.g N 0.470
MELLADRAFT_86211 Melampsora laricipopulina MELLADRAFT_86211 N 0.467
Gorai.005G106800 Gossypium raimondii Gorai.005G106800 N 0.447
M7I_1506 Glarea lozoyensis M7I_1506 N 0.444
estExt_fgenesh2_pg.C_390049 Monosiga brevicollis estExt_fgenesh2_pg.C_390049 N 0.441
GH17483 Drosophila grimshawi FBgn0124953 N 0.435
NechaG59892 Fusarium solani NechaG59892 N 0.431
EDI_065970 Entamoeba dispar EDI_065970 N 0.431
estExt_Genewise1.C_sca_3_chr4_2_00418 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00418 N 0.431
sox9a Tetraodon nigroviridis ENSTNIG00000001901 N 0.429
DAPPUDRAFT_259784 Daphnia pulex DAPPUDRAFT_259784 N 0.424
GA28914 Drosophila pseudoobscura FBgn0250273 N 0.423
ENSOANG00000002448 Ornithorhynchus anatinus ENSOANG00000002448 I 0.419
CMQ_5875 Grosmannia clavigera CMQ_5875 N 0.418
TVAG_468590 Trichomonas vaginalis TVAG_468590 N 0.417
fgenesh_scip_prom.28083.3150 Phytophthora lateralis fgenesh_scip_prom.28083.3150 N 0.416
Physo127875 Phytophthora sojae Physo127875 N 0.416
fgenesh1_pm.C_scaffold_23000166 Phytophthora capsici fgenesh1_pm.C_scaffold_23000166 N 0.416