CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CUX2
(
Homo sapiens
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSG00000111249
T167057_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a protein which contains three CUT domains and a homeodomain; both domains are DNA-binding motifs. A similar gene, whose gene product possesses different DNA-binding activities, is located on chromosome on chromosome 7. Two pseudogenes of this gene have been identified on chromosomes 10 and 4. [provided by RefSeq, Jan 2013]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CUX2
M01499_2.00
Homo sapiens
NKATYRVNN
NNBYRATMN
PBM
Yin et al.(2017b)
CUX2_5mCG
(Direct)
(Direct)
CUX2
M01500_2.00
Homo sapiens
NDATYRRHN
NDYYRATHN
PBM
Yin et al.(2017b)
CUX2_Cytosine
(Direct)
(Direct)
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
(Direct)
(Direct)
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA
TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
(Direct)
(Direct)
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN
NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
(Direct)
(Direct)
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB
VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD
HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.986
0.986
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.888
0.888
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.888
0.888
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN
NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.888
0.888
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN
NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.888
0.888
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.888
0.888
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.888
0.888
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT
ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.888
0.888
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.888
0.888
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN
NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.888
0.888
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.888
0.888
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB
VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.888
0.888
CUX1
M10427_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.888
0.888
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.888
0.888
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR
YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.888
0.888
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01499_2.00
CUT
25
103
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
M01499_2.00
CUT
368
443
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAV
M01499_2.00
CUT
519
596
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLR
M01499_2.00
Homeodomain
645
701
KKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
M01500_2.00
CUT
25
103
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
M01500_2.00
CUT
368
443
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAV
M01500_2.00
CUT
519
596
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLR
M01500_2.00
Homeodomain
645
701
KKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000261726
CUT
549
627
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
ENSP00000261726
CUT
892
967
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAV
ENSP00000261726
CUT
1043
1120
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVEKLR
ENSP00000261726
Homeodomain
1169
1225
KKPRVVLAPEEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
Links
Other
CUT,Homeodomain
family TFs
Other
Homo sapiens
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy