POPTR_0016s13380 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0016s13380 T004738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.682 0.736
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s13380.1 AP2 70 129

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.795
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.708
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.702
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.695
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.695
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.695
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.691
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.684
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.683
PK07402.1 Cannabis sativa PK07402.1 D 0.682
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.680
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.679
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.678
mgf017629m Mimulus guttatus mgf017629m I 0.678
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.677