cassava17064.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava17064.m1 T006818_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.750 0.765
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.750 0.765
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.750 0.765
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.750 0.765
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.750 0.765
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.750 0.765
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.714 0.725
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.706 0.824
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.706 0.824
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.702 0.804
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.702 0.804
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.702 0.804
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.702 0.804
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.677 0.745
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.677 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava17064.m1 AP2 37 89

Links

Other AP2 family TFs
Other Manihot esculenta TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30138.m003899 Ricinus communis 30138.m003899 I 0.000
30138.m003913 Ricinus communis 30138.m003913 I 0.000
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.000
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.000
BIM1 Arabidopsis thaliana AT5G08130 D 0.000
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.000
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.000
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.000
Bo2g161110 Brassica oleracea Bo2g161110 I 0.000
Bo3g004690 Brassica oleracea Bo3g004690 I 0.000
Bo5g020460 Brassica oleracea Bo5g020460 I 0.000
Bo9g174770 Brassica oleracea Bo9g174770 I 0.000
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.000
Bra005969 Brassica rapa Bra005969 I 0.000
Bra009322 Brassica rapa Bra009322 I 0.000
Bra029354 Brassica rapa Bra029354 I 0.000
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.000
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.000
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.000
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.000
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.000
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.000
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.000
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.000
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.000
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.000
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.000
Cla018818 Citrullus lanatus Cla018818 I 0.000
Cla022382 Citrullus lanatus Cla022382 I 0.000
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.000
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.000
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.000
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.000
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.000
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.000
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.000
F775_23096 Aegilops tauschii F775_23096 I 0.000
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.000
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.000
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.000
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.000
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.000
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.000
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.000
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.000
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.000
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.000
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.000
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.000
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.000
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.000
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.000
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.000
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.000
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.000
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.000
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.000
MDP0000261293 Malus domestica MDP0000261293 I 0.000
mgf001137m Mimulus guttatus mgf001137m I 0.000
mgf005849m Mimulus guttatus mgf005849m I 0.000
mgf013208m Mimulus guttatus mgf013208m I 0.000
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.000
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.000
OB02G38020 Oryza brachyantha OB02G38020 I 0.000
OB08G25940 Oryza brachyantha OB08G25940 I 0.000
OBART09G13850 Oryza barthii OBART09G13850 I 0.000
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.000
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.000
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.000
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.000
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.000
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.000
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.000
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.000
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.000
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.000
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.000
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.000
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.000
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.000
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.000
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.000
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.000
OS02G0726700 Oryza sativa OS02G0726700 I 0.000
OS08G0490000 Oryza sativa OS08G0490000 I 0.000
OS09G0475400 Oryza sativa OS09G0475400 I 0.000
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.000
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.000
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.000
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.000
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.000
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.000
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.000
PK01364.1 Cannabis sativa PK01364.1 I 0.000
PK10562.1 Cannabis sativa PK10562.1 I 0.000
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.000
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.000
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.000
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.000
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.000
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.000
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.000
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.000
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.000
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.000
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.000
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.000
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.000
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.000
Si013622m.g Setaria italica Si013622m.g I 0.000
Si016505m.g Setaria italica Si016505m.g I 0.000
Si029604m.g Setaria italica Si029604m.g I 0.000
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.000
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.000
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.000
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.000
TCM_014392 Theobroma cacao TCM_014392 I 0.000
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.000
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.000
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.000
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.000
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.000
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.000
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.000
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.000