DREB1F (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G12610 T000404_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
(Direct) (Direct)
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
(Direct) (Direct)
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
(Direct) (Direct)
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
(Direct) (Direct)
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.865 1.000
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.787 0.840
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.735 0.840
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.735 0.840
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.735 0.840
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.703 0.760
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.703 0.760
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.703 0.760
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.703 0.760
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.701 0.760
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.701 0.760
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.686 0.720
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.686 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00840_2.00 AP2 28 79
M00962_2.00 AP2 28 79

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G12610.1 AP2 28 79

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.865
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.857
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.857
Bra016763 Brassica rapa Bra016763 I 0.852
Bo01335s010 Brassica oleracea Bo01335s010 I 0.852
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.846
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.845
Bra026963 Brassica rapa Bra026963 I 0.839
Bo8g108050 Brassica oleracea Bo8g108050 I 0.839
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.787
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.787
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.787
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.776
Bo5g016750 Brassica oleracea Bo5g016750 I 0.774
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.772
mgf019061m Mimulus guttatus mgf019061m I 0.772
mgf017136m Mimulus guttatus mgf017136m I 0.770
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.768
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.768
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.766
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.765
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.755
Cla011674 Citrullus lanatus Cla011674 I 0.753
60638.m00016 Ricinus communis 60638.m00016 I 0.753
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.750
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.749
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.748
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.748
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.746
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.744
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.744
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.744
Bra027612 Brassica rapa Bra027612 I 0.744
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.744
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.744
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.743
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.741
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.740
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.739
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.739
DREB1E Arabidopsis thaliana AT1G63030 D 0.735
MDP0000154764 Malus domestica MDP0000154764 I 0.735
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.735
Pm023772 Prunus mume Pm023772 I 0.735
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.735
30190.m011119 Ricinus communis 30190.m011119 I 0.734
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.734
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.734
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.733
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.733
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.732
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.732
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.732
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.732
mgf026642m Mimulus guttatus mgf026642m I 0.732
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.732
Pm023775 Prunus mume Pm023775 I 0.732
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.731
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.731
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.730
Pm023769 Prunus mume Pm023769 I 0.730
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.730
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.727
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.726
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.726
PK23332.1 Cannabis sativa PK23332.1 I 0.726
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.725
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.723
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.723
MDP0000198054 Malus domestica MDP0000198054 I 0.722
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.721
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.721
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.721
Cla006315 Citrullus lanatus Cla006315 I 0.719
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.719
TCM_016175 Theobroma cacao TCM_016175 I 0.715
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.715
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.714
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.714
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.713
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.713
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.711
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.711
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.710
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.710
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.710
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.709
30190.m011120 Ricinus communis 30190.m011120 I 0.709
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.709
Bra019777 Brassica rapa Bra019777 I 0.707
30147.m014313 Ricinus communis 30147.m014313 I 0.706
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.706
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.704
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.704
DREB1A Arabidopsis thaliana AT4G25480 D 0.703
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.702
Bra028290 Brassica rapa Bra028290 I 0.701
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.701
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.701
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.701
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.701
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.701
Bo9g104770 Brassica oleracea Bo9g104770 I 0.701
DREB1D Arabidopsis thaliana AT5G51990 D 0.701
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.698
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.697
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.697
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.697
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.697
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.697
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.697
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.695
Cla002362 Citrullus lanatus Cla002362 I 0.694
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.693
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.691
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.691
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.689
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.689
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.689
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.688
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.687
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.687
DREB1G Oryza indica BGIOSGA008804 I 0.686
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.686
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.686
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.686
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.686
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.686
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.686
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.686
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.686
DREB1G Oryza sativa OS02G0677300 D 0.686
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.686
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.686
OBART02G27760 Oryza barthii OBART02G27760 I 0.686
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.686
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.683
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.683
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.682
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.682
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.681
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.681
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.680
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.680
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.679
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.679
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.679
mgf026339m Mimulus guttatus mgf026339m I 0.679
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.678