PGSC0003DMG400004255 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400004255 T004350_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.746 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.746 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.746 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.746 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.746 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.746 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.729 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.729 0.740
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.717 0.700
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.708 0.720
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.708 0.720
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.708 0.720
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.708 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.695 0.700
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.695 0.700
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.695 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400010876 AP2 45 96

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.803
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.784
Cla011674 Citrullus lanatus Cla011674 I 0.782
mgf017136m Mimulus guttatus mgf017136m I 0.781
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.779
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.779
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.777
Pm023775 Prunus mume Pm023775 I 0.777
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.777
MDP0000154764 Malus domestica MDP0000154764 I 0.776
30190.m011120 Ricinus communis 30190.m011120 I 0.776
mgf019061m Mimulus guttatus mgf019061m I 0.775
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.775
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.774
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.772
MDP0000198054 Malus domestica MDP0000198054 I 0.768
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.763
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.763
Pm023769 Prunus mume Pm023769 I 0.763
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.762
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.760
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.758
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.756
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.755
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.755
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.755
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.753
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.751
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.749
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.749
Bra016763 Brassica rapa Bra016763 I 0.748
Bo01335s010 Brassica oleracea Bo01335s010 I 0.748
Pm023772 Prunus mume Pm023772 I 0.747
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.747
DREB1F Arabidopsis thaliana AT1G12610 D 0.746
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.746
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.745
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.744
Bra026963 Brassica rapa Bra026963 I 0.743
Bo8g108050 Brassica oleracea Bo8g108050 I 0.743
Ca_08732 Cicer arietinum Ca_08732 I 0.742
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.742
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.740
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.740
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.740
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.740
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.740
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.740
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.739
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.739
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.739
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.739
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.738
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.738
mgf026642m Mimulus guttatus mgf026642m I 0.738
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.737
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.736
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.736
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.736
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.736
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.736
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.735
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.735
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.734
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.733
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.733
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.733
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.733
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.732
TCM_016175 Theobroma cacao TCM_016175 I 0.732
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.731
PK23332.1 Cannabis sativa PK23332.1 I 0.731
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.730
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.730
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.730
Cla006315 Citrullus lanatus Cla006315 I 0.730
Bra028290 Brassica rapa Bra028290 I 0.729
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.729
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.729
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.729
DREB1D Arabidopsis thaliana AT5G51990 D 0.729
Bo9g104770 Brassica oleracea Bo9g104770 I 0.729
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.729
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.729
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.728
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.728
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.726
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.726
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.724
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.724
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.723
Cla002362 Citrullus lanatus Cla002362 I 0.721
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.719
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.718
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.718
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.717
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.717
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.717
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.716
mgf026339m Mimulus guttatus mgf026339m I 0.716
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.716
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.715
30147.m014313 Ricinus communis 30147.m014313 I 0.714
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.713
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.713
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.713
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.712
60638.m00016 Ricinus communis 60638.m00016 I 0.711
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.711
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.710
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.710
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.708
DREB1A Arabidopsis thaliana AT4G25480 D 0.708
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.708
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.708
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.704
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.704
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.704
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.704
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.703
Bra027612 Brassica rapa Bra027612 I 0.703
Bo5g016750 Brassica oleracea Bo5g016750 I 0.703
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.702
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.701
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.701
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.699
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.699
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.699
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.699
30190.m011119 Ricinus communis 30190.m011119 I 0.698
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.697
DREB1C Arabidopsis thaliana AT4G25470 D 0.695
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.695
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.693
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.693
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.690
Bra019777 Brassica rapa Bra019777 I 0.690
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.689
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.689
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.688
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.686
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.686
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.680
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.680
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.680
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.679