Solyc08g007830.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc08g007830.1 T005498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.738 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.738 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.738 0.780
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.706 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.706 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.706 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.706 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.706 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.706 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.685 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g007830.1.1 AP2 36 87

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.816
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.789
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.776
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.766
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.763
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.759
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.752
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.752
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.752
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.750
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.750
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.745
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.744
DREB1E Arabidopsis thaliana AT1G63030 D 0.738
MDP0000198054 Malus domestica MDP0000198054 I 0.734
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.733
mgf019061m Mimulus guttatus mgf019061m I 0.732
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.731
Cla011674 Citrullus lanatus Cla011674 I 0.729
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.728
mgf017136m Mimulus guttatus mgf017136m I 0.727
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.724
MDP0000154764 Malus domestica MDP0000154764 I 0.724
Pm023775 Prunus mume Pm023775 I 0.724
Pm023772 Prunus mume Pm023772 I 0.723
Pm023777 Prunus mume Pm023777 N 0.723
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.719
Pm023769 Prunus mume Pm023769 I 0.719
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.717
Ca_04504 Cicer arietinum Ca_04504 I 0.710
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.709
Ca_02407 Cicer arietinum Ca_02407 N 0.709
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.708
Bra016763 Brassica rapa Bra016763 I 0.708
Bo01335s010 Brassica oleracea Bo01335s010 I 0.708
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.708
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.708
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.708
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.708
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.707
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.706
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.706
DREB1F Arabidopsis thaliana AT1G12610 D 0.706
mgf016974m Mimulus guttatus mgf016974m I 0.706
mgf018631m Mimulus guttatus mgf018631m I 0.706
mgf022408m Mimulus guttatus mgf022408m I 0.706
mgf018934m Mimulus guttatus mgf018934m I 0.706
Ca_03665 Cicer arietinum Ca_03665 N 0.705
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.704
Bra026963 Brassica rapa Bra026963 I 0.703
Bo8g108050 Brassica oleracea Bo8g108050 I 0.703
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.702
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.702
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.702
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.702
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.701
30190.m011120 Ricinus communis 30190.m011120 I 0.701
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.700
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.700
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.699
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.699
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.699
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.698
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.698
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.698
mgf026642m Mimulus guttatus mgf026642m I 0.697
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.695
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.693
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.693
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.692
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.692
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.692
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.692
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.692
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.690
PK23332.1 Cannabis sativa PK23332.1 I 0.690
Cla006315 Citrullus lanatus Cla006315 I 0.689
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.689
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.689
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.688
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.687
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.687
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.685
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.685
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.685
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.684
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.681
60638.m00016 Ricinus communis 60638.m00016 I 0.680
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.680
Ca_02408 Cicer arietinum Ca_02408 N 0.680
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.679
TCM_016175 Theobroma cacao TCM_016175 I 0.678
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.678
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.678
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.678
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.677
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.677
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.677
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.677