Gorai.008G243600 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.008G243600 T008629_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.760 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.760 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.760 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.760 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.749 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.749 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.732 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.732 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.732 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.732 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.732 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.732 0.760
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.725 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.725 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.725 0.800
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.706 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.706 0.760
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.703 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G243600.1 AP2 68 119

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm023775 Prunus mume Pm023775 I 0.854
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.854
MDP0000154764 Malus domestica MDP0000154764 I 0.850
MDP0000198054 Malus domestica MDP0000198054 I 0.844
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.839
Pm023769 Prunus mume Pm023769 I 0.839
Cla011674 Citrullus lanatus Cla011674 I 0.836
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.833
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.831
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.826
Pm023772 Prunus mume Pm023772 I 0.823
TCM_016175 Theobroma cacao TCM_016175 I 0.818
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.811
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.800
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.799
30190.m011120 Ricinus communis 30190.m011120 I 0.798
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.796
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.791
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.789
mgf026642m Mimulus guttatus mgf026642m I 0.789
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.788
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.788
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.785
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.784
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.783
PK23332.1 Cannabis sativa PK23332.1 I 0.783
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.782
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.781
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.781
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.781
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.779
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.779
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.779
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.779
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.779
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.778
60638.m00016 Ricinus communis 60638.m00016 I 0.778
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.777
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.775
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.775
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.775
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.775
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.774
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.773
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.772
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.772
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.772
Cla006315 Citrullus lanatus Cla006315 I 0.771
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.770
mgf017136m Mimulus guttatus mgf017136m I 0.770
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.762
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.762
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.761
DREB1A Arabidopsis thaliana AT4G25480 D 0.760
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.760
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.759
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.759
mgf019061m Mimulus guttatus mgf019061m I 0.758
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.757
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.756
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.755
30147.m014313 Ricinus communis 30147.m014313 I 0.755
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.754
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.753
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.752
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.752
Cla002362 Citrullus lanatus Cla002362 I 0.751
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.750
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.749
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.749
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.749
Bo9g104770 Brassica oleracea Bo9g104770 I 0.749
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.749
Bra028290 Brassica rapa Bra028290 I 0.749
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.749
DREB1D Arabidopsis thaliana AT5G51990 D 0.749
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.748
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.748
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.747
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.746
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.745
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.745
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.745
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.745
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.744
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.744
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.744
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.744
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.742
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.741
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.741
30190.m011119 Ricinus communis 30190.m011119 I 0.741
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.740
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.739
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.738
Bra016763 Brassica rapa Bra016763 I 0.736
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.736
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.736
Bo01335s010 Brassica oleracea Bo01335s010 I 0.736
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.735
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.733
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.733
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.732
DREB1F Arabidopsis thaliana AT1G12610 D 0.732
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.730
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.730
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.729
Bra026963 Brassica rapa Bra026963 I 0.729
Bo8g108050 Brassica oleracea Bo8g108050 I 0.729
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.729
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.729
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.728
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.728
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.725
DREB1C Arabidopsis thaliana AT4G25470 D 0.725
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.724
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.724
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.723
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.722
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.722
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.722
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.722
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.722
Ca_08732 Cicer arietinum Ca_08732 I 0.719
mgf026339m Mimulus guttatus mgf026339m I 0.718
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.715
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.715
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.715
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.715
Pm023777 Prunus mume Pm023777 N 0.714
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.713
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.713
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.713
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.710
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.710
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.710
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.708
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.707
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.706
DREB1G Oryza sativa OS02G0677300 D 0.706
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.706
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.706
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.706
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.706
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.706
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.706
DREB1G Oryza indica BGIOSGA008804 I 0.706
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.706
OBART02G27760 Oryza barthii OBART02G27760 I 0.706
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.706
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.706
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.706
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.706
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.703
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.703
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.703
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.702
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.701
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.700
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.697
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.696
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.695
Si018262m.g Setaria italica Si018262m.g I 0.695
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.695
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.693
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.693
Ca_18948 Cicer arietinum Ca_18948 I 0.692
Pm019386 Prunus mume Pm019386 I 0.691
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.690
Bo5g016750 Brassica oleracea Bo5g016750 I 0.689
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.688
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.687
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.686
Ca_04504 Cicer arietinum Ca_04504 I 0.686
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.686
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.685
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.685
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.685
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.681
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.680
mgf018631m Mimulus guttatus mgf018631m I 0.679
mgf016974m Mimulus guttatus mgf016974m I 0.679
mgf022408m Mimulus guttatus mgf022408m I 0.679
mgf018934m Mimulus guttatus mgf018934m I 0.679
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.678
Bra019777 Brassica rapa Bra019777 I 0.677