AMTR_s00069p00141520 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00069p00141520 T000378_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.680 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.680 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.680 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.680 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN19383 AP2 196 247

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.737
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.720
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.720
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.713
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.712
mgf026642m Mimulus guttatus mgf026642m I 0.710
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.705
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.705
PK23332.1 Cannabis sativa PK23332.1 I 0.703
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.703
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.702
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.702
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.702
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.698
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.697
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.696
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.695
Cla006315 Citrullus lanatus Cla006315 I 0.694
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.694
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.692
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.692
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.691
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.690
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.690
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.688
Cla011674 Citrullus lanatus Cla011674 I 0.686
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.686
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.686
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.685
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.684
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.684
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.684
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.683
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.683
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.683
TCM_016175 Theobroma cacao TCM_016175 I 0.683
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.682
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.680
DREB1A Arabidopsis thaliana AT4G25480 D 0.680
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.680