VIT_06s0061g01400 (Vitis vinifera)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 VIT_06s0061g01400 T006050_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.720 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.720 0.800
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.710 0.740
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.710 0.740
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.710 0.740
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.688 0.760
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.688 0.760
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.688 0.760
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.688 0.760
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.683 0.700
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.683 0.700
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.683 0.700
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.683 0.700
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.683 0.700
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.683 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_06s0061g01400.t01 AP2 44 95

Links

Other AP2 family TFs
Other Vitis vinifera TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.769
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.764
60638.m00016 Ricinus communis 60638.m00016 I 0.761
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.755
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.752
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.752
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.746
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.746
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.746
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.746
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.746
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.746
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.745
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.745
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.743
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.739
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.738
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.737
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.737
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.735
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.735
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.732
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.726
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.724
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.724
MDP0000198054 Malus domestica MDP0000198054 I 0.724
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.723
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.722
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.722
DREB1D Arabidopsis thaliana AT5G51990 D 0.720
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.720
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.720
Bo9g104770 Brassica oleracea Bo9g104770 I 0.720
Bra028290 Brassica rapa Bra028290 I 0.720
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.720
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.720
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.720
30190.m011119 Ricinus communis 30190.m011119 I 0.715
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.715
Pm023772 Prunus mume Pm023772 I 0.714
MDP0000154764 Malus domestica MDP0000154764 I 0.714
Pm023775 Prunus mume Pm023775 I 0.714
Pm023769 Prunus mume Pm023769 I 0.714
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.714
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.714
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.712
DREB1C Arabidopsis thaliana AT4G25470 D 0.710
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.708
Cla002362 Citrullus lanatus Cla002362 I 0.707
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.702
30147.m014313 Ricinus communis 30147.m014313 I 0.701
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.700
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.700
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.698
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.695
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.694
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.694
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.694
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.694
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.694
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.692
TCM_016175 Theobroma cacao TCM_016175 I 0.691
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.691
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.691
Bo01335s010 Brassica oleracea Bo01335s010 I 0.690
Bra016763 Brassica rapa Bra016763 I 0.690
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.688
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.688
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.688
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.688
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.688
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.688
mgf026642m Mimulus guttatus mgf026642m I 0.688
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.688
DREB1A Arabidopsis thaliana AT4G25480 D 0.688
30190.m011120 Ricinus communis 30190.m011120 I 0.687
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.686
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.686
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.684
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.684
Cla006315 Citrullus lanatus Cla006315 I 0.684
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.683
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.683
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.683
DREB1F Arabidopsis thaliana AT1G12610 D 0.683
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.682
PK23332.1 Cannabis sativa PK23332.1 I 0.682
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.682
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.682
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.682
Cla011674 Citrullus lanatus Cla011674 I 0.682
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.682
Bo8g108050 Brassica oleracea Bo8g108050 I 0.681
Bra026963 Brassica rapa Bra026963 I 0.681
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.681
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.681
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.679
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.679
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.678