Thhalv10009978m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10009978m.g T009918_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.845 0.940
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.845 0.940
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.845 0.940
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.845 0.940
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.845 0.940
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.845 0.940
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.781 0.820
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.715 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.715 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.715 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.706 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.706 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.706 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.706 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.703 0.780
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.703 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.689 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.689 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009978m AP2 29 80

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.852
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.852
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.845
DREB1F Arabidopsis thaliana AT1G12610 D 0.845
Bra026963 Brassica rapa Bra026963 I 0.842
Bo8g108050 Brassica oleracea Bo8g108050 I 0.842
Bo01335s010 Brassica oleracea Bo01335s010 I 0.841
Bra016763 Brassica rapa Bra016763 I 0.841
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.834
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.781
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.781
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.781
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.779
Bo5g016750 Brassica oleracea Bo5g016750 I 0.777
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.775
mgf019061m Mimulus guttatus mgf019061m I 0.775
mgf017136m Mimulus guttatus mgf017136m I 0.772
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.769
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.768
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.762
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.762
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.762
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.762
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.762
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.762
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.762
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.757
60638.m00016 Ricinus communis 60638.m00016 I 0.756
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.753
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.751
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.751
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.749
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.746
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.744
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.743
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.742
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.742
Cla011674 Citrullus lanatus Cla011674 I 0.742
Bra027612 Brassica rapa Bra027612 I 0.738
MDP0000154764 Malus domestica MDP0000154764 I 0.738
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.738
30190.m011119 Ricinus communis 30190.m011119 I 0.737
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.737
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.737
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.736
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.736
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.735
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.735
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.735
mgf026642m Mimulus guttatus mgf026642m I 0.735
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.735
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.735
Pm023775 Prunus mume Pm023775 I 0.735
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.734
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.734
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.733
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.732
Pm023769 Prunus mume Pm023769 I 0.732
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.730
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.729
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.729
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.729
PK23332.1 Cannabis sativa PK23332.1 I 0.729
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.728
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.728
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.726
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.726
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.726
MDP0000198054 Malus domestica MDP0000198054 I 0.725
Pm023772 Prunus mume Pm023772 I 0.724
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.724
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.723
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.723
Cla006315 Citrullus lanatus Cla006315 I 0.721
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.721
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.718
TCM_016175 Theobroma cacao TCM_016175 I 0.718
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.717
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.716
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.716
DREB1E Arabidopsis thaliana AT1G63030 D 0.715
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.714
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.713
30190.m011120 Ricinus communis 30190.m011120 I 0.712
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.712
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.712
Bra019777 Brassica rapa Bra019777 I 0.710
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.709
30147.m014313 Ricinus communis 30147.m014313 I 0.709
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.707
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.707
DREB1A Arabidopsis thaliana AT4G25480 D 0.706
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.705
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.705
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.705
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.704
Bra028290 Brassica rapa Bra028290 I 0.703
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.703
DREB1D Arabidopsis thaliana AT5G51990 D 0.703
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.703
Bo9g104770 Brassica oleracea Bo9g104770 I 0.703
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.703
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.703
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.703
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.701
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.700
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.699
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.699
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.699
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.699
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.699
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.698
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.697
Cla002362 Citrullus lanatus Cla002362 I 0.697
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.696
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.694
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.694
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.692
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.692
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.692
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.691
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.690
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.690
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.689
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.689
DREB1G Oryza indica BGIOSGA008804 I 0.689
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.689
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.689
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.689
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.689
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.689
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.689
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.689
Si018262m.g Setaria italica Si018262m.g I 0.689
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.689
DREB1G Oryza sativa OS02G0677300 D 0.689
OBART02G27760 Oryza barthii OBART02G27760 I 0.689
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.686
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.686
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.685
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.685
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.684
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.683
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.683
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.683
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.683
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.682
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.682
mgf026339m Mimulus guttatus mgf026339m I 0.682
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.681
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.680