Bra027612 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra027612 T001182_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.797 0.980
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.744 0.804
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.744 0.804
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.744 0.804
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.744 0.804
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.744 0.804
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.744 0.804
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.731 0.941
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.731 0.941
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.731 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027612.1-P AP2 28 79

Links

Other AP2 family TFs
Other Brassica rapa TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.797
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.797
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.797
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.779
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.779
Bo5g016750 Brassica oleracea Bo5g016750 I 0.768
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.744
DREB1F Arabidopsis thaliana AT1G12610 D 0.744
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.738
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.736
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.736
Bra026963 Brassica rapa Bra026963 I 0.732
Bo8g108050 Brassica oleracea Bo8g108050 I 0.732
Bo01335s010 Brassica oleracea Bo01335s010 I 0.731
Bra016763 Brassica rapa Bra016763 I 0.731
DREB1E Arabidopsis thaliana AT1G63030 D 0.731
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.725
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.719
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.713
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.712
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.711
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.711
30190.m011119 Ricinus communis 30190.m011119 I 0.704
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.704
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.703
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.701
Bra019777 Brassica rapa Bra019777 I 0.701
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.698
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.698
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.698
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.698
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.698
mgf017136m Mimulus guttatus mgf017136m I 0.698
mgf019061m Mimulus guttatus mgf019061m I 0.698
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.698
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.695
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.695
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.694
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.691
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.691
30190.m011120 Ricinus communis 30190.m011120 I 0.688
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.686
60638.m00016 Ricinus communis 60638.m00016 I 0.683
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.678