orange1.1g029015m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g029015m.g T009241_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.766 0.860
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.766 0.860
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.728 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.728 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.728 0.820
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.727 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.727 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.727 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.727 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.697 0.800
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.697 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.689 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.689 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.689 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.689 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.689 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.689 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g029015m AP2 43 94

Links

Other AP2 family TFs
Other Citrus sinensis TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.809
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.801
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.797
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.796
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.794
MDP0000198054 Malus domestica MDP0000198054 I 0.794
30190.m011120 Ricinus communis 30190.m011120 I 0.790
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.787
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.786
Cla011674 Citrullus lanatus Cla011674 I 0.785
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.784
Pm023775 Prunus mume Pm023775 I 0.784
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.782
MDP0000154764 Malus domestica MDP0000154764 I 0.781
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.778
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.778
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.769
Pm023772 Prunus mume Pm023772 I 0.769
Pm023769 Prunus mume Pm023769 I 0.769
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.768
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.768
Bo9g104770 Brassica oleracea Bo9g104770 I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.766
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.766
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.766
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.766
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.766
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.766
DREB1D Arabidopsis thaliana AT5G51990 D 0.766
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.766
Bra028290 Brassica rapa Bra028290 I 0.766
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.766
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.763
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.763
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.763
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.761
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.760
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.756
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.756
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.756
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.756
Cla002362 Citrullus lanatus Cla002362 I 0.754
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.753
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.753
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.750
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.750
mgf026642m Mimulus guttatus mgf026642m I 0.750
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.750
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.748
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.748
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.747
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.747
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.747
Ca_18948 Cicer arietinum Ca_18948 I 0.746
Cla006315 Citrullus lanatus Cla006315 I 0.745
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.745
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.745
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.745
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.745
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.743
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.743
PK23332.1 Cannabis sativa PK23332.1 I 0.743
TCM_016175 Theobroma cacao TCM_016175 I 0.741
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.741
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.739
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.739
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.738
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.737
60638.m00016 Ricinus communis 60638.m00016 I 0.735
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.735
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.734
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.734
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.734
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.732
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.731
30147.m014313 Ricinus communis 30147.m014313 I 0.730
mgf017136m Mimulus guttatus mgf017136m I 0.729
DREB1C Arabidopsis thaliana AT4G25470 D 0.728
DREB1A Arabidopsis thaliana AT4G25480 D 0.727
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.727
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.726
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.726
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.726
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.726
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.726
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.725
30190.m011119 Ricinus communis 30190.m011119 I 0.724
Ca_08732 Cicer arietinum Ca_08732 I 0.723
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.721
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.721
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.720
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.719
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.719
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.719
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.718
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.718
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.718
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.718
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.718
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.718
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.718
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.718
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.718
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.718
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.717
mgf019061m Mimulus guttatus mgf019061m I 0.717
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.714
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.714
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.713
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.713
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.712
mgf016974m Mimulus guttatus mgf016974m I 0.712
mgf022408m Mimulus guttatus mgf022408m I 0.712
mgf018934m Mimulus guttatus mgf018934m I 0.712
mgf018631m Mimulus guttatus mgf018631m I 0.712
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.711
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.711
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.711
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.711
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.710
mgf026339m Mimulus guttatus mgf026339m I 0.710
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.707
Pm023777 Prunus mume Pm023777 N 0.707
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.707
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.707
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.704
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.703
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.703
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.703
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.701
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.701
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.700
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.700
Bra022770 Brassica rapa Bra022770 I 0.700
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.700
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.699
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.699
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.698
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.698
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.698
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.697
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.697
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.697
Bra019162 Brassica rapa Bra019162 I 0.697
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.697
Bo7g110320 Brassica oleracea Bo7g110320 I 0.697
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.696
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.696
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.696
Bo01335s010 Brassica oleracea Bo01335s010 I 0.695
Bra016763 Brassica rapa Bra016763 I 0.695
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.694
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.693
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.692
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.692
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.690
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.690
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.690
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.689
DREB1F Arabidopsis thaliana AT1G12610 D 0.689
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.688
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.688
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.687
Ca_03665 Cicer arietinum Ca_03665 N 0.686
Bra026963 Brassica rapa Bra026963 I 0.686
Bo8g108050 Brassica oleracea Bo8g108050 I 0.686
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.685
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.685
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.684
Bra010460 Brassica rapa Bra010460 I 0.683
Bo8g050800 Brassica oleracea Bo8g050800 I 0.683
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.682
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.682
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.682
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.681
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.681
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.680
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.679
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.679
Ca_02407 Cicer arietinum Ca_02407 N 0.678
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.677
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.677