Bo7g110320 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo7g110320 T000904_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.811 1.000
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.811 1.000
Q8W242_BRANA
M09747_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF_01 		0.707 0.900
Q8S2T2_BRANA
M09744_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF17_01 		0.707 0.900
A6N8P3_BRANA
M09738_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBI5_01 		0.707 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.703 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.703 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.703 0.860
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.699 0.880
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.699 0.880
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g110320.1 AP2 49 100

Links

Other AP2 family TFs
Other Brassica oleracea TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.811
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.811
Bra019162 Brassica rapa Bra019162 I 0.811
Bra022770 Brassica rapa Bra022770 I 0.808
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.742
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.731
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.725
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.722
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.719
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.709
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.709
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.709
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.709
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.709
30147.m014313 Ricinus communis 30147.m014313 I 0.709
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.707
Bo8g050740 Brassica oleracea Bo8g050740 I 0.707
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.707
Bra010461 Brassica rapa Bra010461 I 0.707
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.707
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.706
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.705
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.705
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.705
Bo3g024240 Brassica oleracea Bo3g024240 I 0.705
Cla006315 Citrullus lanatus Cla006315 I 0.704
DREB1C Arabidopsis thaliana AT4G25470 D 0.703
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.703
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.702
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.702
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.702
PK23332.1 Cannabis sativa PK23332.1 I 0.702
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.702
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.702
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.702
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.699
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.699
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.699
DREB1D Arabidopsis thaliana AT5G51990 D 0.699
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.699
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.699
Cla002362 Citrullus lanatus Cla002362 I 0.699
Bra028290 Brassica rapa Bra028290 I 0.699
Bo9g104770 Brassica oleracea Bo9g104770 I 0.699
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.697
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.697
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.696
mgf026642m Mimulus guttatus mgf026642m I 0.696
DREB1A Arabidopsis thaliana AT4G25480 D 0.696
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.690
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.687
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.686
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.685
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.685
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.685
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.685
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.684
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.680
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.680
mgf022408m Mimulus guttatus mgf022408m I 0.679
mgf016974m Mimulus guttatus mgf016974m I 0.679
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.679
mgf018631m Mimulus guttatus mgf018631m I 0.679
mgf018934m Mimulus guttatus mgf018934m I 0.679
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.679
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.678
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.678
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.678
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.678