Q8S2T5_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q8S2T5_BRANA T010129_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T5_BRANA
M09746_2.00		 Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.705 0.940
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.696 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.696 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.696 0.880
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.693 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.693 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q8S2T5_BRANA AP2 48 99

Links

Other AP2 family TFs
Other Brassica napus TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g024240 Brassica oleracea Bo3g024240 I 0.842
Bra022770 Brassica rapa Bra022770 I 0.708
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.705
Bra019162 Brassica rapa Bra019162 I 0.705
Bo7g110320 Brassica oleracea Bo7g110320 I 0.705
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.705
DREB1C Arabidopsis thaliana AT4G25470 D 0.696
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.693
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.693
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.693
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.693
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.693
Bra028290 Brassica rapa Bra028290 I 0.693
DREB1D Arabidopsis thaliana AT5G51990 D 0.693
Cla002362 Citrullus lanatus Cla002362 I 0.693
Bo9g104770 Brassica oleracea Bo9g104770 I 0.693
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.689
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.678