cassava41218.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava41218.m1 T006927_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.702 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.702 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.677 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.677 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.677 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.677 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41218.m1 AP2 67 118

Links

Other AP2 family TFs
Other Manihot esculenta TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.758
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.758
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.751
MDP0000198054 Malus domestica MDP0000198054 I 0.744
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.739
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.738
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.736
Cla011674 Citrullus lanatus Cla011674 I 0.735
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.734
Pm023775 Prunus mume Pm023775 I 0.734
30190.m011120 Ricinus communis 30190.m011120 I 0.733
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.732
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.732
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.732
MDP0000154764 Malus domestica MDP0000154764 I 0.731
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.728
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.728
Aquca_028_00229 Aquilegia coerulea Aquca_028_00229 N 0.721
Pm023769 Prunus mume Pm023769 I 0.719
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.719
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.719
Pm023772 Prunus mume Pm023772 I 0.719
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.718
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.718
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.717
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.717
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.716
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.716
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.715
Bo8g050800 Brassica oleracea Bo8g050800 I 0.714
Bra010460 Brassica rapa Bra010460 I 0.714
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.713
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.713
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.710
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.710
TCM_041493 Theobroma cacao TCM_041493 N 0.709
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.706
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.706
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.706
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.706
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.706
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.705
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.704
Aquca_027_00400 Aquilegia coerulea Aquca_027_00400 N 0.703
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.703
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.703
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.703
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.702
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.702
Bra028290 Brassica rapa Bra028290 I 0.702
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.702
DREB1D Arabidopsis thaliana AT5G51990 D 0.702
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.702
Bo9g104770 Brassica oleracea Bo9g104770 I 0.702
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.702
mgf026642m Mimulus guttatus mgf026642m I 0.700
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.700
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.700
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.699
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.699
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.698
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.698
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.698
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.697
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.696
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.695
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.695
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.695
Cla006315 Citrullus lanatus Cla006315 I 0.695
Ca_08732 Cicer arietinum Ca_08732 I 0.694
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.694
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.694
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.693
PK23332.1 Cannabis sativa PK23332.1 I 0.693
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.693
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.692
TCM_016175 Theobroma cacao TCM_016175 I 0.691
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.691
Pm023777 Prunus mume Pm023777 N 0.690
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.690
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.689
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.689
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.689
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.689
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.689
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.689
Cla002362 Citrullus lanatus Cla002362 I 0.689
Ca_04504 Cicer arietinum Ca_04504 I 0.688
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.688
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.688
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.688
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.688
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.687
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.686
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.686
60638.m00016 Ricinus communis 60638.m00016 I 0.685
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.684
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.684
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.684
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.684
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.684
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.684
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.682
mgf026339m Mimulus guttatus mgf026339m I 0.682
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.681
30147.m014313 Ricinus communis 30147.m014313 I 0.680
mgf017136m Mimulus guttatus mgf017136m I 0.679
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.679
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.677
DREB1A Arabidopsis thaliana AT4G25480 D 0.677