CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.8.141.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gw1.8.141.1
T007310_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gw1.8.141.1
M01642_2.00
Physcomitrella patens
CACCGACM
KGTCGGTG
PBM
Weirauch et al.(2014)
pTH8456
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00
Physcomitrella patens
NCACCGACHN
NDGTCGGTGN
PBM
Weirauch et al.(2014)
pTH8472
0.714
0.860
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01642_2.00
AP2
8
59
PKYRGVRMRQWGKWVSEIREPNKRSRIWLGSFPTAEMAARAYDAAVVCLRGP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.8.141.1
AP2
8
59
PKYRGVRMRQWGKWVSEIREPNKRSRIWLGSFPTAEMAARAYDAAVVCLRGP
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.55.249.1
Physcomitrella patens
gw1.55.249.1
I
0.834
e_gw1.60.212.1
Physcomitrella patens
e_gw1.60.212.1
I
0.825
gw1.480.6.1
Physcomitrella patens
gw1.480.6.1
I
0.804
gw1.296.16.1
Physcomitrella patens
gw1.296.16.1
I
0.782
gw1.155.87.1
Physcomitrella patens
gw1.155.87.1
I
0.773
gw1.14.214.1
Physcomitrella patens
gw1.14.214.1
I
0.736
gw1.276.83.1
Physcomitrella patens
gw1.276.83.1
I
0.735
gw1.117.121.1
Physcomitrella patens
gw1.117.121.1
I
0.728
LjT33K05.50.nd
Lotus japonicus
LjT33K05.50.nd
I
0.716
estExt_gwp_gw1.C_550163
Physcomitrella patens
estExt_gwp_gw1.C_550163
D
0.714
gw1.133.82.1
Physcomitrella patens
gw1.133.82.1
I
0.704
28353.m000054
Ricinus communis
28353.m000054
I
0.703
gw1.15.199.1
Physcomitrella patens
gw1.15.199.1
I
0.702
Bra023026
Brassica rapa
Bra023026
I
0.698
Bo3g028500
Brassica oleracea
Bo3g028500
I
0.698
PK25970.1
Cannabis sativa
PK25970.1
I
0.698
Gorai.003G175100
Gossypium raimondii
Gorai.003G175100
I
0.697
TCM_015930
Theobroma cacao
TCM_015930
I
0.695
Gorai.004G196700
Gossypium raimondii
Gorai.004G196700
I
0.694
evm.TU.supercontig_89.73
Carica papaya
evm.TU.supercontig_89.73
I
0.693
cassava4979.m1
Manihot esculenta
cassava4979.m1
I
0.692
PRUPE_ppa010340mg
Prunus persica
PRUPE_ppa010340mg
I
0.691
Pm023417
Prunus mume
Pm023417
I
0.691
Ca_12765
Cicer arietinum
Ca_12765
I
0.691
LjT37H17.40.nd
Lotus japonicus
LjT37H17.40.nd
I
0.689
MTR_4g100650
Medicago truncatula
MTR_4g100650
I
0.689
GLYMA17G15310
Glycine max
GLYMA17G15310
I
0.689
GLYMA05G04920
Glycine max
GLYMA05G04920
I
0.689