Cagra.0483s0087 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0483s0087 T007698_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM

KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.686 0.580
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.686 0.620
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.686 0.620
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.686 0.620
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.681 0.760
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.681 0.760
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.681 0.760
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.678 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0483s0087.1.p AP2 93 144

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.683
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.730
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.715
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.681
CRF4 Arabidopsis thaliana AT4G27950 D 0.681
CRF2 Arabidopsis thaliana AT4G23750 D 0.683
CRF6 Arabidopsis thaliana AT3G61630 I 0.720
CRF5 Arabidopsis thaliana AT2G46310 I 0.708
ERF118 Arabidopsis thaliana AT1G68550 D 0.686
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.707
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.683
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.802
Bo8g096140 Brassica oleracea Bo8g096140 I 0.697
Bo6g077880 Brassica oleracea Bo6g077880 I 0.753
Bra003462 Brassica rapa Bra003462 I 0.753
PK24580.1 Cannabis sativa PK24580.1 D 0.686
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.681
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.707
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.683
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.683
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.681
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.826
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.707
Cla008128 Citrullus lanatus Cla008128 I 0.678
Cla011108 Citrullus lanatus Cla011108 I 0.679
Cla004291 Citrullus lanatus Cla004291 I 0.680
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.679
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.680
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.678
Thhalv10006118m.g Eutrema salsugineum Thhalv10006118m.g I 0.678
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.722
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.688
GLYMA14G38610 Glycine max GLYMA14G38610 I 0.697
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.687
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.697
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.681
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.677
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.677
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.681
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.692
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.692
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.692
mgf023807m Mimulus guttatus mgf023807m I 0.683
PRUPE_ppa018978mg Prunus persica PRUPE_ppa018978mg N 0.698
28641.m000082 Ricinus communis 28641.m000082 I 0.678
TCM_005203 Theobroma cacao TCM_005203 I 0.687
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.683