PK24580.1 (Cannabis sativa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 PK24580.1 T010100_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00		 Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.711 0.694
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.711 0.694
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.711 0.694
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01101_2.00 AP2 51 102

DNA Binding Domains

Protein ID Domain From To Sequence
PK24580.1 AP2 111 162

Links

Other AP2 family TFs
Other Cannabis sativa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.754
MDP0000119956 Malus domestica MDP0000119956 I 0.750
MDP0000743350 Malus domestica MDP0000743350 I 0.750
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.749
Cla008128 Citrullus lanatus Cla008128 I 0.749
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.747
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.747
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.747
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.744
MDP0000759299 Malus domestica MDP0000759299 I 0.737
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.733
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.732
Pm029052 Prunus mume Pm029052 I 0.730
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.720
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.720
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.717
ERF118 Arabidopsis thaliana AT1G68550 D 0.711
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.707
Ca_05485 Cicer arietinum Ca_05485 I 0.704
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.704
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.694
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.693
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.691
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.686
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.686
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.682
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.682
mgf006610m Mimulus guttatus mgf006610m I 0.682
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.681
Cla021763 Citrullus lanatus Cla021763 I 0.680
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.679
Cla000729 Citrullus lanatus Cla000729 I 0.679