Cla008128 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla008128 T006438_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.749 0.837
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.710 0.633
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.710 0.633
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.710 0.633
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla008128 AP2 118 169

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.810
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.784
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.784
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.784
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.779
Ca_05485 Cicer arietinum Ca_05485 I 0.749
PK24580.1 Cannabis sativa PK24580.1 D 0.749
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.747
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.742
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.742
MDP0000743350 Malus domestica MDP0000743350 I 0.731
MDP0000119956 Malus domestica MDP0000119956 I 0.731
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.728
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.727
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.726
Cla021763 Citrullus lanatus Cla021763 I 0.725
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.722
MDP0000759299 Malus domestica MDP0000759299 I 0.720
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.715
Pm029052 Prunus mume Pm029052 I 0.710
ERF118 Arabidopsis thaliana AT1G68550 D 0.710
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.709
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.700
Cla000729 Citrullus lanatus Cla000729 I 0.697
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.695
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.695
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.693
MDP0000166779 Malus domestica MDP0000166779 N 0.693
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.692
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.690
mgf006610m Mimulus guttatus mgf006610m I 0.685
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.684
MTR_8g023700 Medicago truncatula MTR_8g023700 N 0.683
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.681
Pavir.Da01893 Panicum virgatum Pavir.Da01893 N 0.681
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.681
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.678
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.678