Cucsa.256230 (Cucumis sativus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cucsa.256230 T007071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.682 0.686
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.681 0.549
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.681 0.549
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.681 0.549
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.256230.1 AP2 94 145

Links

Other AP2 family TFs
Other Cucumis sativus TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla021763 Citrullus lanatus Cla021763 I 0.807
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.731
Cla008128 Citrullus lanatus Cla008128 I 0.727
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.727
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.722
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.718
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.717
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.717
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.717
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.715
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.703
Cucsa.283620 Cucumis sativus Cucsa.283620 N 0.699
Cla020699 Citrullus lanatus Cla020699 N 0.699
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.693
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.690
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.685
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.685
PK24580.1 Cannabis sativa PK24580.1 D 0.682
Ca_05485 Cicer arietinum Ca_05485 I 0.682
TCM_011811 Theobroma cacao TCM_011811 I 0.682
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.682
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.682
ERF118 Arabidopsis thaliana AT1G68550 D 0.681