Gorai.011G114900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.011G114900 T008688_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.690 0.882
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.690 0.882
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.690 0.882
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.683 0.745
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.683 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G114900.1 AP2 133 184

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm028829 Prunus mume Pm028829 I 0.746
PRUPE_ppa006595mg Prunus persica PRUPE_ppa006595mg I 0.746
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I 0.742
MDP0000226099 Malus domestica MDP0000226099 I 0.740
MDP0000186131 Malus domestica MDP0000186131 I 0.740
MDP0000229036 Malus domestica MDP0000229036 I 0.738
Ca_04147 Cicer arietinum Ca_04147 I 0.735
MTR_3g095190 Medicago truncatula MTR_3g095190 I 0.735
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.733
SapurV1A.0787s0040 Salix purpurea SapurV1A.0787s0040 I 0.732
GLYMA04G39510 Glycine max GLYMA04G39510 I 0.730
cassava14079.valid.m1 Manihot esculenta cassava14079.valid.m1 I 0.727
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.727
27965.m000108 Ricinus communis 27965.m000108 I 0.727
chr1.CM0032.40.nd Lotus japonicus chr1.CM0032.40.nd I 0.727
POPTR_0005s08940 Populus trichocarpa POPTR_0005s08940 I 0.724
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I 0.722
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I 0.722
Si026709m.g Setaria italica Si026709m.g I 0.722
cassava21882.m1 Manihot esculenta cassava21882.m1 I 0.721
gene06406-v1.0-hybrid Fragaria vesca gene06406-v1.0-hybrid I 0.721
gene21091-v1.0-hybrid Fragaria vesca gene21091-v1.0-hybrid I 0.721
evm.TU.supercontig_72.47 Carica papaya evm.TU.supercontig_72.47 I 0.717
Si018024m.g Setaria italica Si018024m.g I 0.713
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I 0.711
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I 0.711
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I 0.711
MTR_1g098460 Medicago truncatula MTR_1g098460 I 0.711
OBART02G18470 Oryza barthii OBART02G18470 I 0.709
MDP0000668122 Malus domestica MDP0000668122 I 0.709
Cla014021 Citrullus lanatus Cla014021 I 0.707
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I 0.707
ERF110 Vitis vinifera VIT_18s0072g00260 I 0.707
29863.m001066 Ricinus communis 29863.m001066 I 0.707
Pm022509 Prunus mume Pm022509 I 0.707
mgf000075m Mimulus guttatus mgf000075m I 0.707
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I 0.707
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I 0.707
Cucsa.363830 Cucumis sativus Cucsa.363830 I 0.707
MDP0000242979 Malus domestica MDP0000242979 I 0.707
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I 0.707
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I 0.707
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I 0.707
MDP0000235028 Malus domestica MDP0000235028 I 0.707
GLYMA20G30835 Glycine max GLYMA20G30835 I 0.707
GLYMA10G36760 Glycine max GLYMA10G36760 I 0.707
Carubv10028647m.g Capsella rubella Carubv10028647m.g I 0.707
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I 0.707
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I 0.707
OS01G0868000 Oryza sativa OS01G0868000 I 0.706
OS05G0437100 Oryza sativa OS05G0437100 I 0.706
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I 0.706
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I 0.706
ORUFI02G19470 Oryza rufipogon ORUFI02G19470 I 0.706
Si002010m.g Setaria italica Si002010m.g I 0.706
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I 0.706
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I 0.706
Ca_18387 Cicer arietinum Ca_18387 I 0.706
Sb04g021160 Sorghum bicolor Sb04g021160 I 0.706
Pavir.J03755 Panicum virgatum Pavir.J03755 I 0.706
Ca_04370 Cicer arietinum Ca_04370 I 0.706
MLOC_7891 Hordeum vulgare MLOC_7891 I 0.706
BGIOSGA000428 Oryza indica BGIOSGA000428 I 0.706
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I 0.706
OMERI01G35460 Oryza meridionalis OMERI01G35460 I 0.706
ONIVA01G43260 Oryza nivara ONIVA01G43260 I 0.706
BGIOSGA019928 Oryza indica BGIOSGA019928 I 0.706
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.706
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I 0.706
GRMZM2G100727 Zea mays GRMZM2G100727 I 0.706
GRMZM2G149756 Zea mays GRMZM2G149756 I 0.706
LPERR01G33110 Leersia perrieri LPERR01G33110 I 0.706
ONIVA02G20490 Oryza nivara ONIVA02G20490 I 0.706
BGIOSGA006362 Oryza indica BGIOSGA006362 I 0.706
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I 0.706
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I 0.706
OPUNC02G16450 Oryza punctata OPUNC02G16450 I 0.706
ONIVA05G18720 Oryza nivara ONIVA05G18720 I 0.706
Ca_19135 Cicer arietinum Ca_19135 I 0.705
Pavir.Aa02595 Panicum virgatum Pavir.Aa02595 I 0.704
LPERR05G14130 Leersia perrieri LPERR05G14130 I 0.702
Cagra.14503s0008 Capsella grandiflora Cagra.14503s0008 I 0.702
Lus10028679.g Linum usitatissimum Lus10028679.g I 0.702
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I 0.702
GRMZM2G457562 Zea mays GRMZM2G457562 I 0.702
OPUNC05G15760 Oryza punctata OPUNC05G15760 I 0.702
SapurV1A.0327s0220 Salix purpurea SapurV1A.0327s0220 I 0.701
PGSC0003DMG400006369 Solanum tuberosum PGSC0003DMG400006369 I 0.701
GRMZM2G016434 Zea mays GRMZM2G016434 I 0.701
Solyc04g071770.2 Solanum lycopersicum Solyc04g071770.2 I 0.701
chr5.CM0052.240.nd Lotus japonicus chr5.CM0052.240.nd I 0.701
POPTR_0002s06620 Populus trichocarpa POPTR_0002s06620 I 0.701
TCM_035671 Theobroma cacao TCM_035671 I 0.701
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.699
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I 0.699
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.699
Solyc12g056590.1 Solanum lycopersicum Solyc12g056590.1 I 0.698
GLYMA16G27950 Glycine max GLYMA16G27950 I 0.698
GLYMA02G08835 Glycine max GLYMA02G08835 I 0.698
Eucgr.F02691 Eucalyptus grandis Eucgr.F02691 I 0.698
PGSC0003DMG400018803 Solanum tuberosum PGSC0003DMG400018803 I 0.698
chr2.LjT11L13.40.nc Lotus japonicus chr2.LjT11L13.40.nc I 0.698
OPUNC11G03940 Oryza punctata OPUNC11G03940 I 0.697
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I 0.696
Bra009272 Brassica rapa Bra009272 I 0.694
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I 0.694
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I 0.694
Bo9g175390 Brassica oleracea Bo9g175390 I 0.694
Carubv10002723m.g Capsella rubella Carubv10002723m.g I 0.694
GLYMA06G17180 Glycine max GLYMA06G17180 I 0.694
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I 0.694
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I 0.694
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I 0.694
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I 0.694
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I 0.694
cassava19959.m1 Manihot esculenta cassava19959.m1 I 0.694
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I 0.694
TCM_014762 Theobroma cacao TCM_014762 I 0.694
Bra037794 Brassica rapa Bra037794 I 0.694
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I 0.693
mgf019280m Mimulus guttatus mgf019280m I 0.693
Bo2g008570 Brassica oleracea Bo2g008570 I 0.692
MTR_6g037610 Medicago truncatula MTR_6g037610 I 0.692
BRADI2G56140 Brachypodium distachyon BRADI2G56140 I 0.692
MTR_3g098580 Medicago truncatula MTR_3g098580 I 0.692
Ca_01387 Cicer arietinum Ca_01387 I 0.692
ORUFI11G04200 Oryza rufipogon ORUFI11G04200 I 0.691
ONIVA11G04340 Oryza nivara ONIVA11G04340 I 0.691
BGIOSGA034432 Oryza indica BGIOSGA034432 I 0.691
OS11G0168500 Oryza sativa OS11G0168500 I 0.691
MDP0000894895 Malus domestica MDP0000894895 I 0.691
OGLUM11G04050 Oryza glumaepatula OGLUM11G04050 I 0.691
Bra005932 Brassica rapa Bra005932 I 0.691
Bo3g004290 Brassica oleracea Bo3g004290 I 0.691
ORGLA11G0040400 Oryza glaberrima ORGLA11G0040400 I 0.691
Bo2g166380 Brassica oleracea Bo2g166380 I 0.690
ABR1 Arabidopsis thaliana AT5G64750 D 0.690
Thhalv10004333m.g Eutrema salsugineum Thhalv10004333m.g I 0.690
ABR1 Arabidopsis lyrata fgenesh2_kg.8__2506__AT5G64750.1 I 0.690
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I 0.690
Bra024325 Brassica rapa Bra024325 I 0.690
Bo3g100930 Brassica oleracea Bo3g100930 I 0.690
Bra031903 Brassica rapa Bra031903 I 0.690
Bostr.7200s0089 Boechera stricta Bostr.7200s0089 I 0.690
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I 0.690
Bostr.0568s0320 Boechera stricta Bostr.0568s0320 I 0.690
Cagra.2438s0028 Capsella grandiflora Cagra.2438s0028 I 0.690
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I 0.690
30147.m014403 Ricinus communis 30147.m014403 I 0.690
Carubv10026540m.g Capsella rubella Carubv10026540m.g I 0.690
Sb05g004170 Sorghum bicolor Sb05g004170 I 0.689
Cla019618 Citrullus lanatus Cla019618 I 0.689
Cucsa.156890 Cucumis sativus Cucsa.156890 I 0.689
LPERR12G03800 Leersia perrieri LPERR12G03800 I 0.688
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I 0.688
Cucsa.365850 Cucumis sativus Cucsa.365850 I 0.687
Cla003851 Citrullus lanatus Cla003851 I 0.687
GRMZM2G076896 Zea mays GRMZM2G076896 I 0.687
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I 0.687
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I 0.687
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I 0.687
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I 0.686
MLOC_68290 Hordeum vulgare MLOC_68290 I 0.686
cassava10717.m1 Manihot esculenta cassava10717.m1 I 0.686
Traes_5BS_80C46D9C4 Triticum aestivum Traes_5BS_80C46D9C4 I 0.686
Pavir.J04335 Panicum virgatum Pavir.J04335 I 0.686
Traes_5BL_60FC12DA6 Triticum aestivum Traes_5BL_60FC12DA6 I 0.686
ERF11 Arabidopsis lyrata fgenesh2_kg.1__3005__AT1G28370.1 I 0.685
GLYMA02G07310 Glycine max GLYMA02G07310 I 0.685
GLYMA16G26320 Glycine max GLYMA16G26320 I 0.685
Lus10022426.g Linum usitatissimum Lus10022426.g I 0.684
Gorai.007G045100 Gossypium raimondii Gorai.007G045100 I 0.684
Pavir.J17038 Panicum virgatum Pavir.J17038 I 0.684
ERF115 Arabidopsis thaliana AT5G07310 D 0.683
MDP0000190237 Malus domestica MDP0000190237 I 0.683
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I 0.683
29900.m001561 Ricinus communis 29900.m001561 I 0.682
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I 0.682
TCM_001301 Theobroma cacao TCM_001301 I 0.681
ERF110 Arabidopsis thaliana AT5G50080 I 0.681
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I 0.681
Carubv10010478m.g Capsella rubella Carubv10010478m.g I 0.681
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I 0.681
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I 0.681
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.679
Pm024604 Prunus mume Pm024604 I 0.679
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I 0.678
Cla007205 Citrullus lanatus Cla007205 I 0.677
Cucsa.349200 Cucumis sativus Cucsa.349200 I 0.677
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I 0.677