Cla003004 (Citrullus lanatus)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		Cla003004 T017097_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB15
M06696_2.00 		Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA		 Dap-seq
OMalley et al.(2016)
AT1G04880_col_a 		0.780 0.780
HMGB15
M06697_2.00 		Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA		 Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla003004 ARID/BRIGHT 55 170
Cla003004 Sox 270 337

Links

Other ARID/BRIGHT,Sox family TFs
Other Citrullus lanatus TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026976mg Prunus persica PRUPE_ppa026976mg I 0.881
Pm009491 Prunus mume Pm009491 I 0.881
Eucgr.H00052 Eucalyptus grandis Eucgr.H00052 I 0.856
TCM_020322 Theobroma cacao TCM_020322 I 0.856
VIT_05s0029g00130 Vitis vinifera VIT_05s0029g00130 I 0.839
Ciclev10005091m.g Citrus clementina Ciclev10005091m.g I 0.822
GLYMA20G38761 Glycine max GLYMA20G38761 I 0.822
Bra032491 Brassica rapa Bra032491 I 0.797
gene06664-v1.0-hybrid Fragaria vesca gene06664-v1.0-hybrid I 0.797
Bo8g115380 Brassica oleracea Bo8g115380 I 0.797
SapurV1A.5889s0010 Salix purpurea SapurV1A.5889s0010 I 0.797
Carubv10010835m.g Capsella rubella Carubv10010835m.g I 0.780
PK27727.1 Cannabis sativa PK27727.1 I 0.780
MTR_7g005970 Medicago truncatula MTR_7g005970 I 0.780
HMGB15 Arabidopsis thaliana AT1G04880 D 0.780
Cagra.1671s0107 Capsella grandiflora Cagra.1671s0107 I 0.780
Aquca_034_00154 Aquilegia coerulea Aquca_034_00154 N 0.771
MTR_1g116180 Medicago truncatula MTR_1g116180 I 0.771
Bo8g004290 Brassica oleracea Bo8g004290 I 0.763
PGSC0003DMG400031288 Solanum tuberosum PGSC0003DMG400031288 I 0.754
mgf005082m Mimulus guttatus mgf005082m N 0.754
Bo5g004970 Brassica oleracea Bo5g004970 I 0.746
Solyc09g091960.2 Solanum lycopersicum Solyc09g091960.2 I 0.737
GSMUA_Achr6G21080_001 Musa acuminata GSMUA_Achr6G21080_001 I 0.729
Cucsa.193910 Cucumis sativus Cucsa.193910 I 0.725