Carubv10020597m.g (Capsella rubella)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Carubv10020597m.g T017133_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.967 0.967
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.967 0.967
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020597m ARID/BRIGHT 41 126
Carubv10020597m Sox 259 326

Links

Other ARID/BRIGHT,Sox family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU10258 Neurospora crassa NCU10258 D 0.000
S40288_05480 Stachybotrys chartarum S40288_05480 I 0.000
S40285_03485 Stachybotrys chlorohalonata S40285_03485 I 0.000
PODANS_3_2470 Podospora anserina PODANS_3_2470 I 0.000
PFICI_12835 Pestalotiopsis fici PFICI_12835 I 0.000
OCS_03476 Ophiocordyceps sinensis OCS_03476 I 0.000
NEUTE1DRAFT_59287 Neurospora tetrasperma NEUTE1DRAFT_59287 I 0.000
MYCTH_2299680 Myceliophthora thermophila MYCTH_2299680 I 0.000
MGU_04014 Metarhizium guizhouense MGU_04014 I 0.000
SAPIO_CDS1545 Scedosporium apiospermum SAPIO_CDS1545 I 0.000
SPBR_03364 Sporothrix brasiliensis SPBR_03364 I 0.000
THITE_2116136 Thielavia terrestris THITE_2116136 I 0.000
estExt_Genewise1.C_150162 Neurospora discreta estExt_Genewise1.C_150162 I 0.000
X797_005481 Metarhizium robertsii X797_005481 I 0.000
VHEMI09735 Torrubiella hemipterigena VHEMI09735 I 0.000
VDBG_08450 Verticillium alfalfae VDBG_08450 I 0.000
VDAG_08115 Verticillium dahliae VDAG_08115 I 0.000
UV8b_1670 Ustilaginoidea virens UV8b_1670 I 0.000
TRIREDRAFT_74091 Trichoderma reesei TRIREDRAFT_74091 I 0.000
TRIATDRAFT_156368 Trichoderma atroviride TRIATDRAFT_156368 I 0.000
MGG_17841 Magnaporthe oryzae MGG_17841 I 0.000
MBR_04448 Metarhizium brunneum MBR_04448 I 0.000
MAPG_01506 Magnaporthe poae MAPG_01506 I 0.000
Cob_02407 Colletotrichum orbiculare Cob_02407 I 0.000
CMQ_399 Grosmannia clavigera CMQ_399 I 0.000
CHGG_05073 Chaetomium globosum CHGG_05073 I 0.000
CGGC5_9646 Colletotrichum gloeosporioides CGGC5_9646 I 0.000
CFIO01_10968 Colletotrichum fioriniae CFIO01_10968 I 0.000
CCM_03999 Cordyceps militaris CCM_03999 I 0.000
BBA_08843 Beauveria bassiana BBA_08843 I 0.000
ACRE_040330 Acremonium chrysogenum ACRE_040330 I 0.000
CPUR_02746 Claviceps purpurea CPUR_02746 I 0.000
CSUB01_05498 Colletotrichum sublineola CSUB01_05498 I 0.000
F503_06010 Ophiostoma piceae uamh F503_06010 I 0.000
MANI_121221 Metarhizium anisopliae MANI_121221 I 0.000
MAM_03050 Metarhizium album MAM_03050 I 0.000
MAJ_01451 Metarhizium majus MAJ_01451 I 0.000
MAC_04266 Metarhizium acridum MAC_04266 I 0.000
HMPREF1624_02413 Sporothrix schenckii HMPREF1624_02413 I 0.000
GLRG_09080 Colletotrichum graminicola GLRG_09080 I 0.000
GGTG_13876 Gaeumannomyces graminis GGTG_13876 I 0.000
FFUJ_09651 Fusarium fujikuroi FFUJ_09651 I 0.000
VDBG_08450 Verticillium albo atrum VDBG_08450 I 0.000