RTV1 (Arabidopsis lyrata)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 scaffold_104641.1 T021153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REM19
M06702_2.00 		Arabidopsis thaliana
TKWTTTTTTTTTKKY
RMMAAAAAAAAAWMA		 Dap-seq
OMalley et al.(2016)
REM19_col_a 		0.979 0.979
REM19
M06703_2.00 		Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH
DWDDMMAAAAAAAAAAAAVWN		 Dap-seq
OMalley et al.(2016)
REM19_colamp_a 		0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104641.1 B3 129 223

Links

Other B3 family TFs
Other Arabidopsis lyrata TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0223 Boechera stricta Bostr.26675s0223 I 1.000
Cagra.4084s0003 Capsella grandiflora Cagra.4084s0003 I 1.000
Carubv10010224m.g Capsella rubella Carubv10010224m.g I 1.000
REM19 Arabidopsis thaliana AT1G49480 D 0.979
Thhalv10012062m.g Eutrema salsugineum Thhalv10012062m.g I 0.979
Bra032286 Brassica rapa Bra032286 I 0.968
Bo5g076230 Brassica oleracea Bo5g076230 I 0.968
Bra014192 Brassica rapa Bra014192 I 0.894
Bo8g011550 Brassica oleracea Bo8g011550 I 0.874
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.779
TCM_037983 Theobroma cacao TCM_037983 I 0.775
Gorai.013G039800 Gossypium raimondii Gorai.013G039800 I 0.737
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.719