CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.0979s0040
(
Salix purpurea
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
SapurV1A.0979s0040
T024139_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.720
0.720
REM19
M06702_2.00
Arabidopsis thaliana
TKWTTTTTTTTTKKY
RMMAAAAAAAAAWMA
Dap-seq
OMalley et al.(2016)
REM19_col_a
0.779
0.779
REM19
M06703_2.00
Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH
DWDDMMAAAAAAAAAAAAVWN
Dap-seq
OMalley et al.(2016)
REM19_colamp_a
0.779
0.779
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.720
0.720
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0979s0040.1.p
B3
65
158
FFQKLILPSTIRDKRLRIPDSFVKKFGHDLLGFVRLIVPGGHVSRIGLIKADEKLWFHDGWQQFVERFTIHIGYFLIFRYEGNAIFNVHIFNLP
SapurV1A.0979s0040.1.p
B3
334
428
CRVVLRPSYLYRGCIMYLPSGFAEKNLNGLSGFMKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTQENNLGEGDVCIFELLKSRDVVLKVTVFRV
SapurV1A.0979s0040.2.p
B3
65
158
FFQKLILPSTIRDKRLRIPDSFVKKFGHDLLGFVRLIVPGGHVSRIGLIKADEKLWFHDGWQQFVERFTIHIGYFLIFRYEGNAIFNVHIFNLP
SapurV1A.0979s0040.3.p
B3
65
158
FFQKLILPSTIRDKRLRIPDSFVKKFGHDLLGFVRLIVPGGHVSRIGLIKADEKLWFHDGWQQFVERFTIHIGYFLIFRYEGNAIFNVHIFNLP
SapurV1A.0979s0040.4.p
B3
110
204
CRVVLRPSYLYRGCIMYLPSGFAEKNLNGLSGFMKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTQENNLGEGDVCIFELLKSRDVVLKVTVFRV
Links
Other
B3
family TFs
Other
Salix purpurea
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.2089s0010
Salix purpurea
SapurV1A.2089s0010
I
0.989
POPTR_0004s15400
Populus trichocarpa
POPTR_0004s15400
I
0.958
POPTR_0009s11170
Populus trichocarpa
POPTR_0009s11170
I
0.926
SapurV1A.0090s0340
Salix purpurea
SapurV1A.0090s0340
I
0.915
GLYMA07G21160
Glycine max
GLYMA07G21160
I
0.823
Thhalv10012062m.g
Eutrema salsugineum
Thhalv10012062m.g
I
0.800
Gorai.013G039800
Gossypium raimondii
Gorai.013G039800
I
0.800
cassava29880.valid.m1
Manihot esculenta
cassava29880.valid.m1
I
0.799
Carubv10010224m.g
Capsella rubella
Carubv10010224m.g
I
0.779
RTV1
Arabidopsis lyrata
scaffold_104641.1
I
0.779
Cagra.4084s0003
Capsella grandiflora
Cagra.4084s0003
I
0.779
REM19
Arabidopsis thaliana
AT1G49480
D
0.779
Bostr.26675s0223
Boechera stricta
Bostr.26675s0223
I
0.779
Bra032286
Brassica rapa
Bra032286
I
0.779
Bo5g076230
Brassica oleracea
Bo5g076230
I
0.779
29851.m002498
Ricinus communis
29851.m002498
I
0.767
TCM_006971
Theobroma cacao
TCM_006971
I
0.767
Bra014192
Brassica rapa
Bra014192
I
0.765
Bo8g011550
Brassica oleracea
Bo8g011550
I
0.747
Gorai.012G150900
Gossypium raimondii
Gorai.012G150900
I
0.741
orange1.1g016655m.g
Citrus sinensis
orange1.1g016655m.g
I
0.741
Ciclev10028642m.g
Citrus clementina
Ciclev10028642m.g
I
0.741
Gorai.005G240900
Gossypium raimondii
Gorai.005G240900
I
0.735
Lus10012041.g
Linum usitatissimum
Lus10012041.g
N
0.730
PRUPE_ppa006275mg
Prunus persica
PRUPE_ppa006275mg
I
0.730
Gorai.002G006500
Gossypium raimondii
Gorai.002G006500
I
0.730
Lus10021006.g
Linum usitatissimum
Lus10021006.g
N
0.726
gene31955-v1.0-hybrid
Fragaria vesca
gene31955-v1.0-hybrid
I
0.725
PK10791.1
Cannabis sativa
PK10791.1
I
0.725
VRN1
Arabidopsis thaliana
AT3G18990
D
0.720
VRN1
Arabidopsis lyrata
fgenesh2_kg.3__2116__AT3G18990.1
I
0.720
Cagra.5105s0003
Capsella grandiflora
Cagra.5105s0003
I
0.720
Carubv10015637m.g
Capsella rubella
Carubv10015637m.g
I
0.720
Bostr.19424s0762
Boechera stricta
Bostr.19424s0762
I
0.720
TCM_037983
Theobroma cacao
TCM_037983
I
0.716
Thhalv10021075m.g
Eutrema salsugineum
Thhalv10021075m.g
I
0.714
Lus10027940.g
Linum usitatissimum
Lus10027940.g
N
0.704
chr2.CM0262.200.nc
Lotus japonicus
chr2.CM0262.200.nc
I
0.704
Bra037544
Brassica rapa
Bra037544
I
0.704
Bo1g115980
Brassica oleracea
Bo1g115980
I
0.704
Bo5g116790
Brassica oleracea
Bo5g116790
I
0.704