SapurV1A.0979s0040 (Salix purpurea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 SapurV1A.0979s0040 T024139_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN

NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.720 0.720
REM19
M06702_2.00
Arabidopsis thaliana
TKWTTTTTTTTTKKY

RMMAAAAAAAAAWMA
Dap-seq
OMalley et al.(2016)
REM19_col_a
0.779 0.779
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB

VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.720 0.720
REM19
M06703_2.00
Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH

DWDDMMAAAAAAAAAAAAVWN
Dap-seq
OMalley et al.(2016)
REM19_colamp_a
0.779 0.779
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0979s0040.1.p B3 65 158
SapurV1A.0979s0040.1.p B3 334 428
SapurV1A.0979s0040.2.p B3 65 158
SapurV1A.0979s0040.3.p B3 65 158
SapurV1A.0979s0040.4.p B3 110 204

Links

Other B3 family TFs
Other Salix purpurea TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.989
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.958
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.926
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.915
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.823
Thhalv10012062m.g Eutrema salsugineum Thhalv10012062m.g I 0.800
Gorai.013G039800 Gossypium raimondii Gorai.013G039800 I 0.800
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.799
Carubv10010224m.g Capsella rubella Carubv10010224m.g I 0.779
RTV1 Arabidopsis lyrata scaffold_104641.1 I 0.779
Cagra.4084s0003 Capsella grandiflora Cagra.4084s0003 I 0.779
REM19 Arabidopsis thaliana AT1G49480 D 0.779
Bostr.26675s0223 Boechera stricta Bostr.26675s0223 I 0.779
Bra032286 Brassica rapa Bra032286 I 0.779
Bo5g076230 Brassica oleracea Bo5g076230 I 0.779
29851.m002498 Ricinus communis 29851.m002498 I 0.767
TCM_006971 Theobroma cacao TCM_006971 I 0.767
Bra014192 Brassica rapa Bra014192 I 0.765
Bo8g011550 Brassica oleracea Bo8g011550 I 0.747
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.741
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.741
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.741
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.735
Lus10012041.g Linum usitatissimum Lus10012041.g N 0.730
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.730
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.730
Lus10021006.g Linum usitatissimum Lus10021006.g N 0.726
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.725
PK10791.1 Cannabis sativa PK10791.1 I 0.725
VRN1 Arabidopsis thaliana AT3G18990 D 0.720
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.720
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.720
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.720
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.720
TCM_037983 Theobroma cacao TCM_037983 I 0.716
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.714
Lus10027940.g Linum usitatissimum Lus10027940.g N 0.704
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.704
Bra037544 Brassica rapa Bra037544 I 0.704
Bo1g115980 Brassica oleracea Bo1g115980 I 0.704
Bo5g116790 Brassica oleracea Bo5g116790 I 0.704