Ciclev10003317m.g (Citrus clementina)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Ciclev10003317m.g T022933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10003317m B3 127 229

Links

Other B3 family TFs
Other Citrus clementina TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.885
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.874
Si016562m.g Setaria italica Si016562m.g I 0.865
OB02G28170 Oryza brachyantha OB02G28170 I 0.863
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.854
PK12669.1 Cannabis sativa PK12669.1 I 0.854
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.854
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.854
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.853
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.853
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.853
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.845
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.845
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.845
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.844
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.844
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.844
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.837
TCM_027113 Theobroma cacao TCM_027113 I 0.835
MDP0000929655 Malus domestica MDP0000929655 I 0.835
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.833
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.825
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.825
PK16974.1 Cannabis sativa PK16974.1 I 0.823
MDP0000258032 Malus domestica MDP0000258032 I 0.823
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.823
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.823
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.823
mgf006511m Mimulus guttatus mgf006511m I 0.823
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.823
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.823
mgf015308m Mimulus guttatus mgf015308m I 0.823
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.823
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.823
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.823
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.823
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.814
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.814
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.812
mgf020855m Mimulus guttatus mgf020855m I 0.812
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.812
Cla019614 Citrullus lanatus Cla019614 I 0.812
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.812
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.812
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.812
Ca_05681 Cicer arietinum Ca_05681 I 0.812
Si000340m.g Setaria italica Si000340m.g I 0.812
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.812
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.812
ARF9 Oryza sativa OS04G0442000 I 0.812
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.812
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.812
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.812
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.812
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.812
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.806
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.806
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.806
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.806
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.804
OB04G20880 Oryza brachyantha OB04G20880 I 0.804
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.802
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.802
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.802
Si009558m.g Setaria italica Si009558m.g I 0.802
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.800
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.796
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.796
Bo9g014770 Brassica oleracea Bo9g014770 I 0.796
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.796
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.796
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.796
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.796
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.796
ARF2 Arabidopsis thaliana AT5G62000 D 0.796
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.796
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.796
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.796
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.796
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.796
Bo2g161810 Brassica oleracea Bo2g161810 I 0.796
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.796
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.796
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.796
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.796
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.796
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.796
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.796
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.796
Pm024588 Prunus mume Pm024588 I 0.796
Bra035910 Brassica rapa Bra035910 I 0.796
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.796
TCM_008374 Theobroma cacao TCM_008374 I 0.796
TCM_014743 Theobroma cacao TCM_014743 I 0.796
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.794
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.794
30128.m008545 Ricinus communis 30128.m008545 I 0.794
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.794
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.794
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.794
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.792
OB12G20020 Oryza brachyantha OB12G20020 I 0.792
Si021216m.g Setaria italica Si021216m.g I 0.792
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.792
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.792
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.792
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.792
OBART11G15270 Oryza barthii OBART11G15270 I 0.786
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.786
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.786
ARF23 Oryza indica BGIOSGA033901 I 0.786
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.786
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.786
F775_31280 Aegilops tauschii F775_31280 I 0.786
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.786
Bra010048 Brassica rapa Bra010048 I 0.786
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.786
MDP0000310875 Malus domestica MDP0000310875 I 0.786
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.786
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.786
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.786
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.786
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.786
Bo3g108130 Brassica oleracea Bo3g108130 I 0.786
OB11G21910 Oryza brachyantha OB11G21910 I 0.786
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.786
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.786
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.786
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.786
OS11G0523800 Oryza sativa OS11G0523800 I 0.786
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.786
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.786
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.786
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.784
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.781
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.781
OLONG_013033 Oryza longistaminata OLONG_013033 I 0.778
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.776
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.776
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.776
ARF4 Oryza sativa OS01G0927600 I 0.776
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.776
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.776
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.776
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.776
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.776
OBART01G42570 Oryza barthii OBART01G42570 I 0.776
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.776
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.776
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.776
F775_32662 Aegilops tauschii F775_32662 I 0.776
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.776
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.773
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.773
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.773
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.773
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.773
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.773
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.773
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.773
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.773
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.771
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.765
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.761
evm.TU.supercontig_9.161 Carica papaya evm.TU.supercontig_9.161 I 0.760
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.750
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.746
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.745
Pavir.J22605 Panicum virgatum Pavir.J22605 I 0.742
estExt_Genewise1.C_140304 Physcomitrella patens estExt_Genewise1.C_140304 I 0.742
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.740
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.740
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.740
SELMODRAFT_438973 Selaginella moellendorffii SELMODRAFT_438973 I 0.740
OB05G33320 Oryza brachyantha OB05G33320 I 0.740
SELMODRAFT_437944 Selaginella moellendorffii SELMODRAFT_437944 I 0.740
TCM_005126 Theobroma cacao TCM_005126 I 0.740
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.735
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.732
gw1.341.65.1 Physcomitrella patens gw1.341.65.1 I 0.732
estExt_Genewise1.C_2800001 Physcomitrella patens estExt_Genewise1.C_2800001 I 0.732
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.732
PK02218.1 Cannabis sativa PK02218.1 I 0.729
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.729
cassava32762.m1 Manihot esculenta cassava32762.m1 I 0.729
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.724
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.724
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.724
30068.m002516 Ricinus communis 30068.m002516 I 0.724
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.724
Bra025779 Brassica rapa Bra025779 I 0.723
Bra018098 Brassica rapa Bra018098 I 0.723
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.722
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.722
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.722
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.722
Bo01141s010 Brassica oleracea Bo01141s010 I 0.719
ARF11 Arabidopsis thaliana AT2G46530 I 0.719
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.719
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.719
ARF18 Arabidopsis thaliana AT3G61830 I 0.719
Bra014419 Brassica rapa Bra014419 I 0.719
e_gw1.64.107.1 Physcomitrella patens e_gw1.64.107.1 I 0.719
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.719
Cla013021 Citrullus lanatus Cla013021 I 0.719
Pm018352 Prunus mume Pm018352 I 0.719
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.719
Bo8g097320 Brassica oleracea Bo8g097320 I 0.719
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.719
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.719
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.719
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.714
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.714
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.714
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.714
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.714
Solyc12g006340.1 Solanum lycopersicum Solyc12g006340.1 I 0.714
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.714
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.714
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.714
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.714
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.714
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.714
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.714
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.714
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.714
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.711
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.708
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.708
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.708
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.708
GRMZM2G056120 Zea mays GRMZM2G056120 I 0.708
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.708
GRMZM5G874163 Zea mays GRMZM5G874163 I 0.708
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.708
Si000545m.g Setaria italica Si000545m.g I 0.708
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.708
Pavir.Eb03157 Panicum virgatum Pavir.Eb03157 I 0.708
Ca_21948 Cicer arietinum Ca_21948 I 0.708
Bo3g039330 Brassica oleracea Bo3g039330 I 0.708
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.708
Pavir.J17853 Panicum virgatum Pavir.J17853 I 0.708
Sb03g034850 Sorghum bicolor Sb03g034850 I 0.708
Cucsa.052860 Cucumis sativus Cucsa.052860 I 0.708
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.704
PK07332.1 Cannabis sativa PK07332.1 I 0.704
chr3.CM0111.110.nd Lotus japonicus chr3.CM0111.110.nd I 0.704
TCM_016500 Theobroma cacao TCM_016500 I 0.704
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.704
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.704
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.704
BRADI2G46190 Brachypodium distachyon BRADI2G46190 I 0.704
AMTR_s00021p00200760 Amborella trichopoda AMTR_s00021p00200760 I 0.704
MDP0000194603 Malus domestica MDP0000194603 I 0.704
VIT_07s0104g01230 Vitis vinifera VIT_07s0104g01230 I 0.704
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.704
mgf005549m Mimulus guttatus mgf005549m I 0.704
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.704
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.704
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.704
PGSC0003DMG400028826 Solanum tuberosum PGSC0003DMG400028826 I 0.701
Solyc08g082630.2 Solanum lycopersicum Solyc08g082630.2 I 0.701