CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g03792
(
Litomosoides sigmodontis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
nLs.2.1.2.g03792
T029570_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bed-3
M00587_2.00
Caenorhabditis elegans
TCGRGANY
RNTCYCGA
PBM
Narasimhan et al.(2015)
pTH9056
0.818
0.818
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t03792-RA
BED ZF
37
81
AKVWKYFIQLPSEEQAAECRICCKRIKATNSSTTGMIRHLRSCHS
Links
Other
BED ZF
family TFs
Other
Litomosoides sigmodontis
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WBGene00241796
Onchocerca volvulus
WBGene00241796
I
1.000
nAv.1.0.1.g03085
Acanthocheilonema viteae
nAv.1.0.1.g03085
I
1.000
nDi.2.2.2.g02831
Dirofilaria immitis
nDi.2.2.2.g02831
I
1.000
nOo.2.0.1.g00032
Onchocerca ochengi
nOo.2.0.1.g00032
I
1.000
LOAG_01923
Loa loa
LOAG_01923
I
1.000
WUBG_08027
Wuchereria bancrofti
WUBG_08027
I
1.000
Bm3595
Brugia malayi
Bm3595
I
1.000
EVEC_0000803501
Enterobius vermicularis
EVEC_0000803501
I
0.955
SMUV_0001051801
Syphacia muris
SMUV_0001051801
I
0.932
scaffold140-EXSNAP2012.77
Pristionchus exspectatus
scaffold140-EXSNAP2012.77
I
0.864
ASU_08993
Ascaris suum
ASU_08993
I
0.864
ASIM_0001651901
Anisakis simplex
ASIM_0001651901
I
0.864
ALUE_0002184101
Ascaris lumbricoides
ALUE_0002184101
I
0.841
CBN11928
Caenorhabditis brenneri
CBN11928
I
0.818
CRE01489
Caenorhabditis remanei
CRE01489
I
0.818
CBG03458
Caenorhabditis briggsae
CBG03458
I
0.818
CRE29878
Caenorhabditis remanei
CRE29878
I
0.818
CJA17936
Caenorhabditis japonica
CJA17936
I
0.818
bed-3
Caenorhabditis elegans
WBGene00009133
D
0.818
CBN28223
Caenorhabditis brenneri
CBN28223
I
0.818
DME_0000322601
Dracunculus medinensis
DME_0000322601
I
0.795
Hba_14997
Heterorhabditis bacteriophora
Hba_14997
I
0.795
PEQ_0001129601
Parascaris equorum
PEQ_0001129601
I
0.783
OESDEN_02515
Oesophagostomum dentatum
OESDEN_02515
I
0.773
SSTP_0001230300
Strongyloides stercoralis
SSTP_0001230300
I
0.773
SPAL_0001677600
Strongyloides papillosus
SPAL_0001677600
I
0.773
RSKR_0000579600
Rhabditophanes kr3021
RSKR_0000579600
I
0.773
PTRK_0000487800
Parastrongyloides trichosuri
PTRK_0000487800
I
0.773
L889_g10141
Steinernema feltiae
L889_g10141
I
0.773
SVE_1688100
Strongyloides venezuelensis
SVE_1688100
I
0.773
CGOC_0000021801
Cylicostephanus goldi
CGOC_0000021801
I
0.773
ANCCEY_10600
Ancylostoma ceylanicum
ANCCEY_10600
I
0.773
L596_g13737
Steinernema carpocapsae
L596_g13737
I
0.773
L892_g25347
Steinernema scapterisci
L892_g25347
I
0.773
L898_g15300
Steinernema monticolum
L898_g15300
I
0.773
L893_g7390
Steinernema glaseri
L893_g7390
I
0.773
NECAME_07822
Necator americanus
NECAME_07822
I
0.773
GPLIN_000014500
Globodera pallida
GPLIN_000014500
I
0.727