CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold140-EXSNAP2012.77
(
Pristionchus exspectatus
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
scaffold140-EXSNAP2012.77
T029666_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bed-3
M00587_2.00
Caenorhabditis elegans
TCGRGANY
RNTCYCGA
PBM
Narasimhan et al.(2015)
pTH9056
0.864
0.864
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold140-EXSNAP2012.77
BED ZF
17
61
AKVWKYFDQLPSEEQAAECQLCRKKIKATNSSTTGMIRHLRSCHV
Links
Other
BED ZF
family TFs
Other
Pristionchus exspectatus
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMUV_0001051801
Syphacia muris
SMUV_0001051801
I
0.909
EVEC_0000803501
Enterobius vermicularis
EVEC_0000803501
I
0.909
ASU_08993
Ascaris suum
ASU_08993
I
0.886
ASIM_0001651901
Anisakis simplex
ASIM_0001651901
I
0.886
Hba_14997
Heterorhabditis bacteriophora
Hba_14997
I
0.864
CGOC_0000021801
Cylicostephanus goldi
CGOC_0000021801
I
0.864
nAv.1.0.1.g03085
Acanthocheilonema viteae
nAv.1.0.1.g03085
I
0.864
NECAME_07822
Necator americanus
NECAME_07822
I
0.864
OESDEN_02515
Oesophagostomum dentatum
OESDEN_02515
I
0.864
nOo.2.0.1.g00032
Onchocerca ochengi
nOo.2.0.1.g00032
I
0.864
nLs.2.1.2.g03792
Litomosoides sigmodontis
nLs.2.1.2.g03792
I
0.864
nDi.2.2.2.g02831
Dirofilaria immitis
nDi.2.2.2.g02831
I
0.864
WUBG_08027
Wuchereria bancrofti
WUBG_08027
I
0.864
CBN28223
Caenorhabditis brenneri
CBN28223
I
0.864
CBN11928
Caenorhabditis brenneri
CBN11928
I
0.864
CJA17936
Caenorhabditis japonica
CJA17936
I
0.864
ANCCEY_10600
Ancylostoma ceylanicum
ANCCEY_10600
I
0.864
CRE29878
Caenorhabditis remanei
CRE29878
I
0.864
CBG03458
Caenorhabditis briggsae
CBG03458
I
0.864
LOAG_01923
Loa loa
LOAG_01923
I
0.864
ALUE_0002184101
Ascaris lumbricoides
ALUE_0002184101
I
0.864
WBGene00241796
Onchocerca volvulus
WBGene00241796
I
0.864
bed-3
Caenorhabditis elegans
WBGene00009133
D
0.864
Bm3595
Brugia malayi
Bm3595
I
0.864
CRE01489
Caenorhabditis remanei
CRE01489
I
0.864
DME_0000322601
Dracunculus medinensis
DME_0000322601
I
0.841
L898_g15300
Steinernema monticolum
L898_g15300
I
0.795
L596_g13737
Steinernema carpocapsae
L596_g13737
I
0.795
L889_g10141
Steinernema feltiae
L889_g10141
I
0.795
L892_g25347
Steinernema scapterisci
L892_g25347
I
0.795
L893_g7390
Steinernema glaseri
L893_g7390
I
0.795
PEQ_0001129601
Parascaris equorum
PEQ_0001129601
I
0.783
SSTP_0001230300
Strongyloides stercoralis
SSTP_0001230300
I
0.773
SPAL_0001677600
Strongyloides papillosus
SPAL_0001677600
I
0.773
SVE_1688100
Strongyloides venezuelensis
SVE_1688100
I
0.773
RSKR_0000579600
Rhabditophanes kr3021
RSKR_0000579600
I
0.773
PTRK_0000487800
Parastrongyloides trichosuri
PTRK_0000487800
I
0.773
GPLIN_000014500
Globodera pallida
GPLIN_000014500
I
0.727