Bra034421 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra034421 T031545_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.879 0.922
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.879 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034421.1-P bHLH 172 222

Links

Other bHLH family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g085170 Brassica oleracea Bo5g085170 I 0.914
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.879
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.879
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.879
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.879
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.879
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.879
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.879
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.879
mgf002701m Mimulus guttatus mgf002701m I 0.879
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.879
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.879
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.879
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.879
PK06301.1 Cannabis sativa PK06301.1 I 0.879
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.879
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.879
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.879
MDP0000269890 Malus domestica MDP0000269890 I 0.879
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.879
Pm004181 Prunus mume Pm004181 I 0.879
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.879
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.879
BHLH81 Arabidopsis thaliana AT4G09180 I 0.879
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.879
Bra036760 Brassica rapa Bra036760 I 0.879
Bo8g026850 Brassica oleracea Bo8g026850 I 0.879
Bra028088 Brassica rapa Bra028088 I 0.879
Bo6g043840 Brassica oleracea Bo6g043840 I 0.879
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.879
BHLH80 Arabidopsis thaliana AT1G35460 D 0.879
TCM_036484 Theobroma cacao TCM_036484 I 0.879
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.879
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.879
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.879
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.879
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I 0.870
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I 0.870
MTR_4g033295 Medicago truncatula MTR_4g033295 I 0.852
PGSC0003DMG400023852 Solanum tuberosum PGSC0003DMG400023852 I 0.849
Solyc12g100140.1 Solanum lycopersicum Solyc12g100140.1 I 0.849
30074.m001421 Ricinus communis 30074.m001421 I 0.847