clockb (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000003631 T033619_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN

NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.882 0.902
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH

DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.882 0.902
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN

NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.882 0.902
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.882 0.902
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.882 0.902
Clock
M09473_2.00
Mus musculus
CACGTGNN

NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.882 0.902
CLOCK
M09849_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.882 0.902
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH

DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.882 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000014344 bHLH 25 75
ENSDARP00000120780 bHLH 25 75

Links

Other bHLH family TFs
Other Danio rerio TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pax6 Mus musculus ENSMUSG00000027168 D 0.000
Ocbimv22011111m.g Octopus bimaculoides Ocbimv22011111m.g I 0.000
ASU_03705 Ascaris suum ASU_03705 I 0.000
D915_05709 Fasciola hepatica D915_05709 I 0.000
DILT_0000442801 Diphyllobothrium latum DILT_0000442801 I 0.000
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.000
ECPE_0000273501 Echinostoma caproni ECPE_0000273501 I 0.000
ECPE_0001376401 Echinostoma caproni ECPE_0001376401 I 0.000
EEL_0001009001 Elaeophora elaphi EEL_0001009001 I 0.000
EmuJ_000389800 Echinococcus multilocularis EmuJ_000389800 I 0.000
EVEC_0000795701 Enterobius vermicularis EVEC_0000795701 I 0.000
ALUE_0001419501 Ascaris lumbricoides ALUE_0001419501 I 0.000
A_03128 Schistosoma haematobium A_03128 I 0.000
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.000
CLEC008733 Cimex lectularius CLEC008733 I 0.000
CLEC008846 Cimex lectularius CLEC008846 I 0.000
LDEC008984 Leptinotarsa decemlineata LDEC008984 I 0.000
Sjc_0004220 Schistosoma japonicum Sjc_0004220 I 0.000
AATE019182 Anopheles atroparvus AATE019182 I 0.000
ACOM023323 Anopheles coluzzii ACOM023323 I 0.000
AMAM010937 Anopheles maculatus AMAM010937 I 0.000
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.000
L889_g29910 Steinernema feltiae L889_g29910 I 0.000
L893_g1041 Steinernema glaseri L893_g1041 I 0.000
nAv.1.0.1.g01083 Acanthocheilonema viteae nAv.1.0.1.g01083 I 0.000
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.000
SMUV_0000412301 Syphacia muris SMUV_0000412301 I 0.000
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.000
TASK_0000210301 Taenia asiatica TASK_0000210301 I 0.000
TCLT_0000790801 Thelazia callipaeda TCLT_0000790801 I 0.000
TCNE_0000738401 Toxocara canis TCNE_0000738401 I 0.000
TELCIR_00311 Teladorsagia circumcincta TELCIR_00311 I 0.000
TRE_0000921601 Trichobilharzia regenti TRE_0000921601 I 0.000
TsM_000804100 Taenia solium TsM_000804100 I 0.000
scaffold478-EXSNAP2012.12 Pristionchus exspectatus scaffold478-EXSNAP2012.12 I 0.000
nRc.2.0.1.g30341 Romanomermis culicivorax nRc.2.0.1.g30341 I 0.000
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.000
nDi.2.2.2.g01404 Dirofilaria immitis nDi.2.2.2.g01404 I 0.000
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.000
NECAME_04524 Necator americanus NECAME_04524 I 0.000
NECAME_04629 Necator americanus NECAME_04629 I 0.000
nLs.2.1.2.g05197 Litomosoides sigmodontis nLs.2.1.2.g05197 I 0.000
nOo.2.0.1.g00953 Onchocerca ochengi nOo.2.0.1.g00953 I 0.000
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.000
nRc.2.0.1.g00894 Romanomermis culicivorax nRc.2.0.1.g00894 I 0.000
TTAC_0000709401 Hydatigera taeniaeformis TTAC_0000709401 I 0.000
pax6a Danio rerio ENSDARG00000103379 I 0.000
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.000
ENSGMOG00000012561 Gadus morhua ENSGMOG00000012561 I 0.000
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.000
ENSPFOG00000011719 Poecilia formosa ENSPFOG00000011719 I 0.000
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.000
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.000
ENSTGUG00000007526 Taeniopygia guttata ENSTGUG00000007526 I 0.000
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.000
pax5 Takifugu rubripes ENSTRUG00000003227 I 0.000
pax5 Danio rerio ENSDARG00000037383 I 0.000
pax2a Danio rerio ENSDARG00000028148 I 0.000
DAPPUDRAFT_122807 Daphnia pulex DAPPUDRAFT_122807 I 0.000
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.000
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.000
WUBG_13045 Wuchereria bancrofti WUBG_13045 I 0.000
pax6b Danio rerio ENSDARG00000045936 I 0.000
ACEP24464 Atta cephalotes ACEP24464 I 0.000
BGIBMGA009432 Bombyx mori BGIBMGA009432 I 0.000
Bm14693 Brugia malayi Bm14693 I 0.000
Bm1956 Brugia malayi Bm1956 I 0.000
CBG04481 Caenorhabditis briggsae CBG04481 I 0.000
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.000
SINV17241 Solenopsis invicta SINV17241 I 0.000
Alligator_sinensis_CCG013279.1 Alligator sinensis Alligator_sinensis_CCG013279.1 I 0.000
SMAR001091 Strigamia maritima SMAR001091 I 0.000
SPU_000276 Strongylocentrotus purpuratus SPU_000276 I 0.000
SPU_006786 Strongylocentrotus purpuratus SPU_006786 I 0.000
SPU_014539 Strongylocentrotus purpuratus SPU_014539 I 0.000
SPU_027334 Strongylocentrotus purpuratus SPU_027334 I 0.000
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.000
YQE_05107 Dendroctonus ponderosae YQE_05107 I 0.000
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.000
RPRC003362 Rhodnius prolixus RPRC003362 I 0.000
RPRC001429 Rhodnius prolixus RPRC001429 I 0.000
ENSXMAG00000012680 Xiphophorus maculatus ENSXMAG00000012680 I 0.000
HMEL009702 Heliconius melpomene HMEL009702 I 0.000
ISCW011634 Ixodes scapularis ISCW011634 I 0.000
KGM_02181 Danaus plexippus KGM_02181 I 0.000
LOAG_00159 Loa loa LOAG_00159 I 0.000
LotgiG99097 Lottia gigantea LotgiG99097 I 0.000
PHUM217120 Pediculus humanus PHUM217120 I 0.000
Ppa-vab-3 Pristionchus pacificus PPA03442 I 0.000
WBGene00241653 Onchocerca volvulus WBGene00241653 I 0.000
ACEP20912 Atta cephalotes ACEP20912 N 0.000
HDID_0000853801 Hymenolepis diminuta HDID_0000853801 N 0.000
ALUE_0000749601 Ascaris lumbricoides ALUE_0000749601 N 0.000
TCLT_0000192601 Thelazia callipaeda TCLT_0000192601 N 0.000